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Chy10G174690 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy10G174690
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionReverse transcriptase
Genome locationchrH10:6847701..6867156
RNA-Seq ExpressionChy10G174690
SyntenyChy10G174690
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]1.84e-1376.19Show/hide
Query:  VHTG*ISLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
        V+TG +SLLTL VL +NDA+VSAGR PLRQR+WECW SPTTS
Subjt:  VHTG*ISLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.74e-0782.86Show/hide
Query:  LLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
        L TL VLS+NDAVVSAG+APLRQRRWEC T PTTS
Subjt:  LLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]6.51e-0880.56Show/hide
Query:  SLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
        SL TL VL NNDA VSAGR PLRQRRWEC T PTTS
Subjt:  SLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.74e-0782.86Show/hide
Query:  LLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
        L TL VLS+NDAVVSAG+APLRQRRWEC T PTTS
Subjt:  LLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]1.40e-0780.56Show/hide
Query:  SLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
        SL TL VL NNDA VSAGR PLRQRRWEC T PTTS
Subjt:  SLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein2.0e-0976.19Show/hide
Query:  VHTG*ISLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
        V+TG +SLLTL VL +NDA+VSAGR PLRQR+WECW SPTTS
Subjt:  VHTG*ISLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
A0A5A7T7M6 Reverse transcriptase4.6e-0682.86Show/hide
Query:  LLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
        L TL VLS+NDAVVSAG+APLRQRRWEC T PTTS
Subjt:  LLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
A0A5A7TDY3 Uncharacterized protein3.6e-0680.56Show/hide
Query:  SLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
        SL TL VL NNDA VSAGR PLRQRRWEC T PTTS
Subjt:  SLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
A0A5D3BTP3 Reverse transcriptase4.6e-0682.86Show/hide
Query:  LLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
        L TL VLS+NDAVVSAG+APLRQRRWEC T PTTS
Subjt:  LLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
A0A5D3DUS7 Uncharacterized protein4.6e-0680.56Show/hide
Query:  SLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
        SL TL VL NNDA VSAGR PLRQRRWEC T PTTS
Subjt:  SLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGCTTTTCACGAACAATCTAAGTAAGCTTGAGCTTTACAAAAGATAAAGATAACAGACGTGTTTTAATGTTTTCGTATGGTTTTTCTATTAACTACATGACAGAGGTGT
TGAGCTCGAGGCTATGTGGTACCGTGTGCACACAGGTTAGATTTCGTTGTTGACGTTGATTGTACTCAGTAACAACGATGCTGTCGTGAGTGCTGGGCGGGCTCCACTAC
GACAAAGACGATGGGAGTGCTGGACGAGCCCCACTACATCGTAGAACTTGTAAACGTTGTTGTACTGGAGATCGAGTTCCCGGTGCCTGATAAACTGCCTTAGCCTGCTG
AAGCTCCGATATCGATTGCCAGTATGTGGTTAGAGTTCAGAGTCGACAGATACAGATAGAGAGAAGCATTGTCTATCAGCTTCACGCCATCTTTCGGTCGAAGCTAGCAG
GCTATATTCAAGTGACACTATATGTCGGGATTTATGTCCTAAAACTCGTGGATTGTAAATA
mRNA sequenceShow/hide mRNA sequence
CAGCTTTTCACGAACAATCTAAGTAAGCTTGAGCTTTACAAAAGATAAAGATAACAGACGTGTTTTAATGTTTTCGTATGGTTTTTCTATTAACTACATGACAGAGGTGT
TGAGCTCGAGGCTATGTGGTACCGTGTGCACACAGGTTAGATTTCGTTGTTGACGTTGATTGTACTCAGTAACAACGATGCTGTCGTGAGTGCTGGGCGGGCTCCACTAC
GACAAAGACGATGGGAGTGCTGGACGAGCCCCACTACATCGTAGAACTTGTAAACGTTGTTGTACTGGAGATCGAGTTCCCGGTGCCTGATAAACTGCCTTAGCCTGCTG
AAGCTCCGATATCGATTGCCAGTATGTGGTTAGAGTTCAGAGTCGACAGATACAGATAGAGAGAAGCATTGTCTATCAGCTTCACGCCATCTTTCGGTCGAAGCTAGCAG
GCTATATTCAAGTGACACTATATGTCGGGATTTATGTCCTAAAACTCGTGGATTGTAAATA
Protein sequenceShow/hide protein sequence
QLFTNNLSKLELYKRR*QTCFNVFVWFFY*LHDRGVELEAMWYRVHTG*ISLLTLIVLSNNDAVVSAGRAPLRQRRWECWTSPTTSNL*TLLYWRSSSRCLINCLSLLKL
RYRLPVCGSSESTDTDREKHCLSASRHLSVEASRLYSSDTICRDLCPKTRGL*I