; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy10G182010 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy10G182010
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description50S ribosomal protein L18
Genome locationchrH10:15474908..15476111
RNA-Seq ExpressionChy10G182010
SyntenyChy10G182010
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135173.1 uncharacterized protein LOC101218434 [Cucumis sativus]7.62e-11995.56Show/hide
Query:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
        MSSLLLNTSN KKVHGGMAFQNVSGLL KTSMPFGLQSK F+FRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
Subjt:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA

Query:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
        MLVDDQNKKCLFYGSTLQKSMRPTPSCTT+EAA HVGEELVKVCMDLNIHEIS YDRNGFA GEKMQAFEIAISRYGFLQ
Subjt:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ

XP_008446359.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo]6.49e-11895Show/hide
Query:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
        MSSLLLNTSNFKKVHGG+AFQNVSGLL KTSMPFGLQSKSF+FRSLKTKHCDVKPL IQARGNSKTESAKVRNRR+QKKYNGTPTRPRLSVFCSDKQLYA
Subjt:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA

Query:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
        MLVDDQNKKCLFYGSTLQKSMRPT SCTT+EAA HVGEELVKVC DLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
Subjt:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ

XP_022987454.1 uncharacterized protein LOC111484997 [Cucurbita maxima]1.19e-10485.56Show/hide
Query:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
        M SL LNT NF+KV+GGM F NV GLL KTS PF  QSK FNF SLK +HCDVKPL IQARGNSKTESAKVRNRR+QKKYNG+ T+PRLSVFCSDKQLYA
Subjt:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA

Query:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
        MLVDDQNKKCLFYGSTLQKSMRP+PSCTT+EAA HVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
Subjt:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ

XP_038891854.1 50S ribosomal protein L18 isoform X1 [Benincasa hispida]1.29e-10787.78Show/hide
Query:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
        M SLLLNT N KKV+GGMAF N  GLL KTS PFGLQSK FNF SLKT++CDVKPLTIQARGNSKTESAK+ NRR+QKKYNGTPTRPRLSVFCSDKQLYA
Subjt:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA

Query:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
        MLVDDQNKKCLFYGSTLQKSMRP+PSCTT+EAA HVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIAISRYG LQ
Subjt:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ

XP_038891856.1 50S ribosomal protein L18 isoform X2 [Benincasa hispida]2.61e-10887.78Show/hide
Query:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
        M SLLLNT N KKV+GGMAF N  GLL KTS PFGLQSK FNF SLKT++CDVKPLTIQARGNSKTESAK+ NRR+QKKYNGTPTRPRLSVFCSDKQLYA
Subjt:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA

Query:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
        MLVDDQNKKCLFYGSTLQKSMRP+PSCTT+EAA HVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIAISRYG LQ
Subjt:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ

TrEMBL top hitse value%identityAlignment
A0A0A0KQM5 Uncharacterized protein4.6e-9295.56Show/hide
Query:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
        MSSLLLNTSN KKVHGGMAFQNVSGLL KTSMPFGLQSK F+FRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
Subjt:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA

Query:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
        MLVDDQNKKCLFYGSTLQKSMRPTPSCTT+EAA HVGEELVKVCMDLNIHEIS YDRNGFA GEKMQAFEIAISRYGFLQ
Subjt:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ

A0A1S3BEE0 50S ribosomal protein L182.3e-9195Show/hide
Query:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
        MSSLLLNTSNFKKVHGG+AFQNVSGLL KTSMPFGLQSKSF+FRSLKTKHCDVKPL IQARGNSKTESAKVRNRR+QKKYNGTPTRPRLSVFCSDKQLYA
Subjt:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA

Query:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
        MLVDDQNKKCLFYGSTLQKSMRPT SCTT+EAA HVGEELVKVC DLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
Subjt:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ

A0A5D3D244 50S ribosomal protein L182.3e-9195Show/hide
Query:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
        MSSLLLNTSNFKKVHGG+AFQNVSGLL KTSMPFGLQSKSF+FRSLKTKHCDVKPL IQARGNSKTESAKVRNRR+QKKYNGTPTRPRLSVFCSDKQLYA
Subjt:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA

Query:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
        MLVDDQNKKCLFYGSTLQKSMRPT SCTT+EAA HVGEELVKVC DLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
Subjt:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ

A0A6J1GYP6 uncharacterized protein LOC1114586891.2e-7984.44Show/hide
Query:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
        M SL LNT NF+KV+GGM F NV GLL KT  PF  QSK FNF SLK +HCDVKPL IQARGNSKTESAKVRNRR QKKYNG+ T+PRLSVFCSDKQLYA
Subjt:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA

Query:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
        MLVDDQNKKCLFYGSTLQKSMRP+PSCTT+EAA HVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIAIS YGFLQ
Subjt:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ

A0A6J1JIY0 uncharacterized protein LOC1114849972.8e-8185.56Show/hide
Query:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA
        M SL LNT NF+KV+GGM F NV GLL KTS PF  QSK FNF SLK +HCDVKPL IQARGNSKTESAKVRNRR+QKKYNG+ T+PRLSVFCSDKQLYA
Subjt:  MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYA

Query:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
        MLVDDQNKKCLFYGSTLQKSMRP+PSCTT+EAA HVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ
Subjt:  MLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ

SwissProt top hitse value%identityAlignment
A9FGF8 50S ribosomal protein L184.5e-1238.32Show/hide
Query:  RNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT-PSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFE
        R  R++KK  GTP RPRLSVF S K +YA ++DD + K L + STL K ++ +      VEAA  VG  + ++C +  I ++  +DRNG+    ++ A  
Subjt:  RNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT-PSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFE

Query:  IAISRYG
         A    G
Subjt:  IAISRYG

P04453 50S ribosomal protein L182.9e-1138.68Show/hide
Query:  SKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARG
        +KTE+ K R+ R++ K  GT  RPRL+VF S+   YA ++DD     L   STL+  ++   S + ++AA  V EEL K  +  NI+++  +DRNG+   
Subjt:  SKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARG

Query:  EKMQAF
         K++AF
Subjt:  EKMQAF

P82195 50S ribosomal protein L18, chloroplastic9.7e-1533.78Show/hide
Query:  SKSFNFRSLKTKHCDVKPLT---IQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT---PSCTTVE
        S S    SL  K  + +P T   IQA+ +++ E    R+ R++KK  GTP RPRL VF S+K LY  ++DD     L   ST+QK++       +  TVE
Subjt:  SKSFNFRSLKTKHCDVKPLT---IQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT---PSCTTVE

Query:  AAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFL
         A  +GE + K C++  I ++ ++DR G+    +++A   A   +G +
Subjt:  AAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFL

Q8SAY0 50S ribosomal protein L18, chloroplastic5.0e-1137.61Show/hide
Query:  RNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT---PSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQA
        R+ R++KK +GT  RPRLSVF S+K LYA ++DD     L   ST+ KS+       +  TVE A  +GE + K C++  I ++  +DR GF    +++A
Subjt:  RNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT---PSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQA

Query:  FEIAISRYG
           A    G
Subjt:  FEIAISRYG

Q9SX68 50S ribosomal protein L18, chloroplastic1.1e-1330.82Show/hide
Query:  GLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT---PSCTTVE
        GLQ ++   +   +     + + ++A+  + +E    R+ R++KK NGT  RPRL VF S+K LY  ++DD     L   ST QK +       S  T+E
Subjt:  GLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT---PSCTTVE

Query:  AAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYG
         A  VGE + K C++  I ++ ++DR G+    +++A   A   +G
Subjt:  AAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYG

Arabidopsis top hitse value%identityAlignment
AT1G14205.1 Ribosomal L18p/L5e family protein4.0e-4871.65Show/hide
Query:  VKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEI
        VKP  I+ARGN++ ES K RNRR +KK+ GT T+PRLSVFCSDKQLYAMLVDD NKKCLFY STLQKS+R  P CT +EAA  VGEEL+K  +DL I+EI
Subjt:  VKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEI

Query:  SSYDRNGFARGEKMQAFEIAISRYGFL
        SSYDRNG  RGE+MQAFEIAI+++GFL
Subjt:  SSYDRNGFARGEKMQAFEIAISRYGFL

AT1G48350.1 Ribosomal L18p/L5e family protein7.6e-1530.82Show/hide
Query:  GLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT---PSCTTVE
        GLQ ++   +   +     + + ++A+  + +E    R+ R++KK NGT  RPRL VF S+K LY  ++DD     L   ST QK +       S  T+E
Subjt:  GLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT---PSCTTVE

Query:  AAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYG
         A  VGE + K C++  I ++ ++DR G+    +++A   A   +G
Subjt:  AAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTCTTTACTTCTAAATACTTCAAATTTCAAAAAAGTTCATGGTGGAATGGCTTTTCAAAATGTTTCTGGTTTGCTACCGAAGACTTCTATGCCATTCGGG
TTGCAGTCAAAGTCATTTAACTTTCGCAGCTTGAAAACTAAACATTGCGATGTGAAGCCGTTGACGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAA
GTTAGAAATAGGAGGATGCAGAAAAAGTATAATGGCACTCCTACAAGACCAAGGCTTTCAGTATTTTGTTCCGATAAACAGTTGTATGCAATGTTGGTTGACGAT
CAGAATAAGAAGTGTTTGTTTTATGGAAGCACCTTACAAAAATCCATGCGTCCAACTCCCTCATGCACCACCGTCGAGGCTGCTCACCATGTTGGTGAAGAACTT
GTCAAAGTATGCATGGATTTGAATATACACGAAATATCATCTTACGATCGAAATGGGTTTGCTCGCGGAGAGAAGATGCAAGCCTTCGAAATTGCAATTTCGCGC
TATGGGTTCTTACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCTCTTTACTTCTAAATACTTCAAATTTCAAAAAAGTTCATGGTGGAATGGCTTTTCAAAATGTTTCTGGTTTGCTACCGAAGACTTCTATGCCATTCGGG
TTGCAGTCAAAGTCATTTAACTTTCGCAGCTTGAAAACTAAACATTGCGATGTGAAGCCGTTGACGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAA
GTTAGAAATAGGAGGATGCAGAAAAAGTATAATGGCACTCCTACAAGACCAAGGCTTTCAGTATTTTGTTCCGATAAACAGTTGTATGCAATGTTGGTTGACGAT
CAGAATAAGAAGTGTTTGTTTTATGGAAGCACCTTACAAAAATCCATGCGTCCAACTCCCTCATGCACCACCGTCGAGGCTGCTCACCATGTTGGTGAAGAACTT
GTCAAAGTATGCATGGATTTGAATATACACGAAATATCATCTTACGATCGAAATGGGTTTGCTCGCGGAGAGAAGATGCAAGCCTTCGAAATTGCAATTTCGCGC
TATGGGTTCTTACAATAG
Protein sequenceShow/hide protein sequence
MSSLLLNTSNFKKVHGGMAFQNVSGLLPKTSMPFGLQSKSFNFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDD
QNKKCLFYGSTLQKSMRPTPSCTTVEAAHHVGEELVKVCMDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ