CuGenDBv2

Gene ID	Chy11G190680
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	60S ribosomal protein L4-like
Genome location	chrH11:5197966..5199649
RNA-Seq Expression	Chy11G190680
Synteny	Chy11G190680
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0016020 - membrane (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004142108.1 60S ribosomal protein L4 [Cucumis sativus]

2.07e-10

89.74

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  RRM LLAE+QRVKAKKEKLDKKRNLTTK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

XP_008449286.1 PREDICTED: 60S ribosomal protein L4-like [Cucumis melo]

2.07e-10

89.74

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  RRM LLAE+QRVKAKKEKLDKKRNLTTK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

XP_022925909.1 60S ribosomal protein L4 [Cucurbita moschata]

2.07e-10

89.74

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  RRM LLAE+QRVKAKKEKLDKKRNLTTK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

XP_022963036.1 60S ribosomal protein L4 [Cucurbita moschata]

2.07e-10

89.74

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  RRM LLAE+QRVKAKKEKLDKKRNLTTK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

XP_038882700.1 60S ribosomal protein L4 [Benincasa hispida]

2.07e-10

89.74

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  RRM LLAE+QRVKAKKEKLDKKRNLTTK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0Q4 Ribos_L4_asso_C domain-containing protein

1.0e-07

89.74

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  RRM LLAE+QRVKAKKEKLDKKRNLTTK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

A0A5A7TZA0 60S ribosomal protein L4-like

1.0e-07

89.74

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  RRM LLAE+QRVKAKKEKLDKKRNLTTK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

A0A6J1EDI0 60S ribosomal protein L4

1.0e-07

89.74

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  RRM LLAE+QRVKAKKEKLDKKRNLTTK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

A0A6J1HEY8 60S ribosomal protein L4

1.0e-07

89.74

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  RRM LLAE+QRVKAKKEKLDKKRNLTTK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

A0A6J1I983 60S ribosomal protein L4-like

1.0e-07

89.74

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  RRM LLAE+QRVKAKKEKLDKKRNLTTK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

SwissProt top hits

e value

%identity

Alignment

P49691 60S ribosomal protein L4-2

1.4e-06

71.79

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        M KLNPYAK  +RM LLAE  RVKAKKEKL+KKR + TK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

Q9SF40 60S ribosomal protein L4-1

6.3e-07

76.92

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  +RM LLAE QRVKAKKEKL KKR   TK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

Q9XF97 60S ribosomal protein L4

4.8e-07

76.92

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  RRM LLAE +RVKAKKEKLDKKR   +K
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

Arabidopsis top hits

e value

%identity

Alignment

AT3G09630.1 Ribosomal protein L4/L1 family

4.5e-08

76.92

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  +RM LLAE QRVKAKKEKL KKR   TK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

AT3G09630.2 Ribosomal protein L4/L1 family

4.5e-08

76.92

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        MLKLNPYAK  +RM LLAE QRVKAKKEKL KKR   TK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

AT5G02870.1 Ribosomal protein L4/L1 family

9.9e-08

71.79

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        M KLNPYAK  +RM LLAE  RVKAKKEKL+KKR + TK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

AT5G02870.2 Ribosomal protein L4/L1 family

9.9e-08

71.79

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Query:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK
        M KLNPYAK  +RM LLAE  RVKAKKEKL+KKR + TK
Subjt:  MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTK

Sequences

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CDS sequence

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ATGCTCAAGCTTAACCCATATGCTAAGAATGGTAGAAGAATGCCTCTTTTGGCAGAGAAGCAACGTGTTAAGGCTAAAAAGGAGAAACTCGACAAGAAGAGGAATTTGAC
TACAAAGGTAAGTGGAGTTCTATTTGAAGAGTCGTATATATGTAAGGAAATTAAAATAAATGAGGAAAATGTTGAAAAGGTTCAACCAAAACCTCACAGAAAGGATAGTC
CTTGGAAAGCTATCCAGAAGGAGAGCAAGGCTAGTGTTGGCATGTGA

mRNA sequence

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Protein sequence

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MLKLNPYAKNGRRMPLLAEKQRVKAKKEKLDKKRNLTTKVSGVLFEESYICKEIKINEENVEKVQPKPHRKDSPWKAIQKESKASVGM

Chy11G190680 (gene) of Cucumber (hystrix) v1 genome