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Chy11G190880 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G190880
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGamma-tubulin complex component
Genome locationchrH11:5538816..5539095
RNA-Seq ExpressionChy11G190880
SyntenyChy11G190880
Gene Ontology termsGO:0000278 - mitotic cell cycle (biological process)
GO:0007020 - microtubule nucleation (biological process)
GO:0031122 - cytoplasmic microtubule organization (biological process)
GO:0051225 - spindle assembly (biological process)
GO:0051321 - meiotic cell cycle (biological process)
GO:0000922 - spindle pole (cellular component)
GO:0000923 - equatorial microtubule organizing center (cellular component)
GO:0000930 - gamma-tubulin complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0043015 - gamma-tubulin binding (molecular function)
GO:0051011 - microtubule minus-end binding (molecular function)
InterPro domainsIPR007259 - Gamma-tubulin complex component protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141369.1 gamma-tubulin complex component 5 isoform X4 [Cucumis sativus]4.00e-3196.77Show/hide
Query:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
        MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGKKF
Subjt:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
XP_008452497.1 PREDICTED: gamma-tubulin complex component 5-like isoform X2 [Cucumis melo]8.96e-3095.16Show/hide
Query:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
        MEQRKSKSLID TSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGKKF
Subjt:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
XP_011654086.1 gamma-tubulin complex component 5 isoform X3 [Cucumis sativus]4.00e-3196.77Show/hide
Query:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
        MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGKKF
Subjt:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
XP_031740260.1 gamma-tubulin complex component 5 isoform X1 [Cucumis sativus]4.00e-3196.77Show/hide
Query:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
        MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGKKF
Subjt:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
XP_031740262.1 gamma-tubulin complex component 5 isoform X2 [Cucumis sativus]4.00e-3196.77Show/hide
Query:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
        MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGKKF
Subjt:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
TrEMBL top hitse value%identityAlignment
A0A0A0L296 Gamma-tubulin complex component9.9e-2696.77Show/hide
Query:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
        MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGKKF
Subjt:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
A0A1S3BTD0 Gamma-tubulin complex component1.4e-2495.16Show/hide
Query:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
        MEQRKSKSLID TSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGKKF
Subjt:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
A0A1S3BV48 Gamma-tubulin complex component1.4e-2495.16Show/hide
Query:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
        MEQRKSKSLID TSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGKKF
Subjt:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
A0A5A7VD97 Gamma-tubulin complex component1.4e-2495.16Show/hide
Query:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
        MEQRKSKSLID TSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGKKF
Subjt:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
A0A5D3D9J5 Gamma-tubulin complex component1.4e-2495.16Show/hide
Query:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
        MEQRKSKSLID TSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFS SLF WDCSGKKF
Subjt:  MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G80260.1 Spc97 / Spc98 family of spindle pole body (SBP) component9.5e-0546.34Show/hide
Query:  HFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF
        H    + S+  +ELDLVRG+LQ LQG S     WD +G+ F
Subjt:  HFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAAAGGAAGAGTAAAAGTTTGATTGACTGCACTAGTGATATATTCGCTAATGGGATTCATTTTGCAGCGCCAATTTCCTCCTTGAGGACGAGTGAGCTTGATCT
GGTACGCGGTGTATTACAAATGTTGCAAGGATTTTCCGATTCACTTTTTTGTTGGGATTGTAGTGGGAAGAAATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCAAAGGAAGAGTAAAAGTTTGATTGACTGCACTAGTGATATATTCGCTAATGGGATTCATTTTGCAGCGCCAATTTCCTCCTTGAGGACGAGTGAGCTTGATCT
GGTACGCGGTGTATTACAAATGTTGCAAGGATTTTCCGATTCACTTTTTTGTTGGGATTGTAGTGGGAAGAAATTTTGA
Protein sequenceShow/hide protein sequence
MEQRKSKSLIDCTSDIFANGIHFAAPISSLRTSELDLVRGVLQMLQGFSDSLFCWDCSGKKF