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Chy11G191430 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G191430
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionExosome complex component RRP45A-like isoform X1
Genome locationchrH11:6390190..6392078
RNA-Seq ExpressionChy11G191430
SyntenyChy11G191430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051235.1 exosome complex component RRP45A-like isoform X1 [Cucumis melo var. makuwa]3.50e-0549.33Show/hide
Query:  PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHYTASTLPSNLGSATPE
        PSS HTSS  +H   VHVS   VSPT+++  DLN V  DSSM EVP      +   P  +  STLPS+LG   PE
Subjt:  PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHYTASTLPSNLGSATPE
TYK18893.1 exosome complex component RRP45A-like isoform X1 [Cucumis melo var. makuwa]8.75e-0551.43Show/hide
Query:  PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHYTASTLPSNLG
        PSS HTSS  +H   VHVS   VSPT+++  DLN V  DSSM EVP      +   P  +T STLPS+LG
Subjt:  PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHYTASTLPSNLG
TrEMBL top hitse value%identityAlignment
A0A5A7UC75 Exosome complex component RRP45A-like isoform X17.5e-0549.33Show/hide
Query:  PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHYTASTLPSNLGSATPE
        PSS HTSS  +H   VHVS   VSPT+++  DLN V  DSSM EVP      +   P  +  STLPS+LG   PE
Subjt:  PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHYTASTLPSNLGSATPE
A0A5D3D5X0 Exosome complex component RRP45A-like isoform X11.7e-0450.63Show/hide
Query:  PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHYTASTLPSNLGSATPEESRV
        PSS HTSS  +H   VHVS   VSPT+++  DLN V  DSSM EVP      +   P  +T STLPS+LG  T  ES V
Subjt:  PSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSMLEVPKSIPSSSQVPPCHYTASTLPSNLGSATPEESRV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCCATCTTCTTCTTCTATTCTTCCTGTTTGTGGTCGACTGATGAAGACCATCCAAGACGACATCGATATAAGTGTCTTCATCGACTTGAAGACATTGAGAGC
TCTGCACCATCCAATGTATCAAGTGTTCCTAAAGTCCCAAGCACCTCTACCATATTGCATGCTTCATCTGCATGTTCTAGTTTCCTTTACCCTGCCTTCCTCCTCCCATA
CATCGTCTCCTACTAGTCATACTGCCTATGTGCATGTGTCAAATGCCTCAGTTAGCCCCACTGTTAACAATTTTTCTGACCTAAACAATGTATTGAGTGATTCTTCCATG
CTTGAAGTTCCTAAGTCCATACCTTCTTCATCTCAAGTACCTCCATGTCATTATACTGCTTCCACTTTGCCTTCCAATCTAGGCTCTGCTACTCCTGAAGAATCCCGTGT
GCTTGCTAGCGCAGTGAGGGATTTATCTACCCAACGATCTACTATTGATTCATTACTTCAAGATCTTCAACGGCTGGTGGCTTCAACTTCTACTTCTGCTTCTGGACCTC
CTTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTTCCATCTTCTTCTTCTATTCTTCCTGTTTGTGGTCGACTGATGAAGACCATCCAAGACGACATCGATATAAGTGTCTTCATCGACTTGAAGACATTGAGAGC
TCTGCACCATCCAATGTATCAAGTGTTCCTAAAGTCCCAAGCACCTCTACCATATTGCATGCTTCATCTGCATGTTCTAGTTTCCTTTACCCTGCCTTCCTCCTCCCATA
CATCGTCTCCTACTAGTCATACTGCCTATGTGCATGTGTCAAATGCCTCAGTTAGCCCCACTGTTAACAATTTTTCTGACCTAAACAATGTATTGAGTGATTCTTCCATG
CTTGAAGTTCCTAAGTCCATACCTTCTTCATCTCAAGTACCTCCATGTCATTATACTGCTTCCACTTTGCCTTCCAATCTAGGCTCTGCTACTCCTGAAGAATCCCGTGT
GCTTGCTAGCGCAGTGAGGGATTTATCTACCCAACGATCTACTATTGATTCATTACTTCAAGATCTTCAACGGCTGGTGGCTTCAACTTCTACTTCTGCTTCTGGACCTC
CTTCCTAG
Protein sequenceShow/hide protein sequence
MAFPSSSSILPVCGRLMKTIQDDIDISVFIDLKTLRALHHPMYQVFLKSQAPLPYCMLHLHVLVSFTLPSSSHTSSPTSHTAYVHVSNASVSPTVNNFSDLNNVLSDSSM
LEVPKSIPSSSQVPPCHYTASTLPSNLGSATPEESRVLASAVRDLSTQRSTIDSLLQDLQRLVASTSTSASGPPS