; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy11G191830 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G191830
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchrH11:7061223..7061811
RNA-Seq ExpressionChy11G191830
SyntenyChy11G191830
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058980.1 uncharacterized protein E6C27_scaffold98G001710 [Cucumis melo var. makuwa]8.35e-4845.41Show/hide
Query:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG
        +K+L WN RG+GS  KRA IKN I  Y+PDFV L ET L   N +++KS W S SI ++ K A G SGGIL++WD   H L++     F+++ NF   + 
Subjt:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG

Query:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL
         +WW+T +YGP  R +R  F  +L NL       W L  D NVIR   ET+S   S +S    N+ I N  LIDPPL N  +TWSNLR+P   SR+
Subjt:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL

TYJ97060.1 hypothetical protein E5676_scaffold506G001280 [Cucumis melo var. makuwa]1.89e-4642.35Show/hide
Query:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG
        +K L WN RG+GS  KRAQIKN IS Y  D V + ETKL   ++  ++SIW+   +K+    + G SGGIL++ +D+  ++ +      +++ N +  DG
Subjt:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG

Query:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL
         +WWI+S+YGP +   R +F  EL  L      NW+LA DFN++RW  ET++    K +M  FN  I   GLIDPPL+N +YTWSNLR     S+L
Subjt:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL

TYK11012.1 uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa]8.35e-4845.41Show/hide
Query:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG
        +K+L WN RG+GS  KRA IKN I  Y+PDFV L ET L   N +++KS W S SI ++ K A G SGGIL++WD   H L++     F+++ NF   + 
Subjt:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG

Query:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL
         +WW+T +YGP  R +R  F  +L NL       W L  D NVIR   ET+S   S +S    N+ I N  LIDPPL N  +TWSNLR+P   SR+
Subjt:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL

XP_011650214.1 uncharacterized protein LOC105434766 [Cucumis sativus]1.17e-11685.34Show/hide
Query:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG
        +KILAWNVRGIGSTQKR QIK+ ISDYAPDFVCL ETKLLN+NNKLVKSIWSSISIKY+FKQ  GRSGGILLMWDDLKHQLIN VIGEFTI+TNFVE DG
Subjt:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG

Query:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPL
        YNWWITSVY  VNR+RRKSF +ELMNLA TCGSNWLLAGDFN IRW+ ETSS++P KYSM KFN LILNLGL+DPPL NGSYTWSNLRDPL
Subjt:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPL

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]4.44e-6451.02Show/hide
Query:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG
        + ILAWNVRG+GS  KRA IK+ I+   PD V L ETK  ++NNK +KS+WSSISI +    A G SGGI+L+WD L    +  + G F+I+ +F   D 
Subjt:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG

Query:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL
        + WW+T VY PV + +RK F +EL +L   CG  WLL  DFN+ RWS+ETSS++P +  M KFN  I   GLIDP + NG YTWSNLR  ++LSR+
Subjt:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL

TrEMBL top hitse value%identityAlignment
A0A5A7UV84 Reverse transcriptase domain-containing protein7.3e-4345.41Show/hide
Query:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG
        +K+L WN RG+GS  KRA IKN I  Y+PDFV L ET L   N +++KS W S SI ++ K A G SGGIL++WD   H L++     F+++ NF   + 
Subjt:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG

Query:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL
         +WW+T +YGP  R +R  F  +L NL       W L  D NVIR   ET+S   S +S    N+ I N  LIDPPL N  +TWSNLR+P   SR+
Subjt:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL

A0A5D3CI86 Reverse transcriptase domain-containing protein7.3e-4345.41Show/hide
Query:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG
        +K+L WN RG+GS  KRA IKN I  Y+PDFV L ET L   N +++KS W S SI ++ K A G SGGIL++WD   H L++     F+++ NF   + 
Subjt:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG

Query:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL
         +WW+T +YGP  R +R  F  +L NL       W L  D NVIR   ET+S   S +S    N+ I N  LIDPPL N  +TWSNLR+P   SR+
Subjt:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL

A0A5E4F090 Reverse transcriptase domain-containing protein (Fragment)8.9e-4140.82Show/hide
Query:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG
        +KI++WN+RG+GS +KR  +K  +    PD V L ETK   ++ +LV  +W S   +++F  ++GRSGGI ++W+     +I+S++G+F+++   VE  G
Subjt:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG

Query:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL
         +WW++ +YGP  +  R SF  EL +L   CG  W L GDFNV+R+S E S+      SM  FN  I    L DP L N S+TWSNLR+  +  RL
Subjt:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL

A0A6J1CVN2 uncharacterized protein LOC1110146571.3e-5251.02Show/hide
Query:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG
        + ILAWNVRG+GS  KRA IK+ I+   PD V L ETK  ++NNK +KS+WSSISI +    A G SGGI+L+WD L    +  + G F+I+ +F   D 
Subjt:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG

Query:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL
        + WW+T VY PV + +RK F +EL +L   CG  WLL  DFN+ RWS+ETSS++P +  M KFN  I   GLIDP + NG YTWSNLR  ++LSR+
Subjt:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL

M5WJ76 Reverse transcriptase domain-containing protein (Fragment)2.0e-4040.82Show/hide
Query:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG
        +KI++WN+RG+GS +KR  +K  +    PD V L ETK   ++ +LV  +W S   +++F  ++GRSGGI ++W+     +I+S++GEF+++    E  G
Subjt:  LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDG

Query:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL
         +WW++ +YGP  +  R SF  EL +L   CG  W L GDFNV+R+S E S+      SM  FN  I    L DP L N S+TWSNLR+  +  RL
Subjt:  YNWWITSVYGPVNRNRRKSF*RELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G40390.1 DNAse I-like superfamily protein1.7e-0438.71Show/hide
Query:  APTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSL---ILNLGLIDPPLANGSYTWSN
        +P C S WL+ GDFN I    E  S  PS  S+     L   + +  L+D P     YTWSN
Subjt:  APTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSL---ILNLGLIDPPLANGSYTWSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGAAAATCTTAGCTTGGAATGTAAGAGGGATAGGCTCTACCCAAAAAAGAGCCCAAATAAAAAATGGTATTTCTGATTATGCTCCTGATTTTGTTTGTCTATTTGAAAC
AAAGTTGTTGAATCTAAACAACAAACTGGTTAAATCTATTTGGAGCTCTATCAGCATCAAATACTTATTTAAACAAGCTATTGGTAGATCGGGTGGCATTCTGTTAATGT
GGGACGATTTGAAGCACCAACTTATCAACTCTGTTATTGGGGAGTTCACCATTACGACAAATTTTGTTGAACCAGATGGCTACAATTGGTGGATCACTTCAGTATATGGC
CCTGTAAACAGAAACAGAAGGAAATCATTTTAGAGAGAGCTGATGAATCTTGCTCCGACCTGTGGATCAAATTGGTTGTTAGCTGGGGATTTCAACGTTATTAGGTGGAG
TAATGAAACTTCATCTAGTAGTCCCTCTAAATACAGCATGGCAAAGTTTAACTCTCTCATTCTCAACCTAGGTTTGATTGATCCTCCTTTGGCAAATGGTTCTTATACCT
GGTCCAACCTTAGGGACCCCCTAATGCTCTCAAGGCTAG
mRNA sequenceShow/hide mRNA sequence
TTGAAAATCTTAGCTTGGAATGTAAGAGGGATAGGCTCTACCCAAAAAAGAGCCCAAATAAAAAATGGTATTTCTGATTATGCTCCTGATTTTGTTTGTCTATTTGAAAC
AAAGTTGTTGAATCTAAACAACAAACTGGTTAAATCTATTTGGAGCTCTATCAGCATCAAATACTTATTTAAACAAGCTATTGGTAGATCGGGTGGCATTCTGTTAATGT
GGGACGATTTGAAGCACCAACTTATCAACTCTGTTATTGGGGAGTTCACCATTACGACAAATTTTGTTGAACCAGATGGCTACAATTGGTGGATCACTTCAGTATATGGC
CCTGTAAACAGAAACAGAAGGAAATCATTTTAGAGAGAGCTGATGAATCTTGCTCCGACCTGTGGATCAAATTGGTTGTTAGCTGGGGATTTCAACGTTATTAGGTGGAG
TAATGAAACTTCATCTAGTAGTCCCTCTAAATACAGCATGGCAAAGTTTAACTCTCTCATTCTCAACCTAGGTTTGATTGATCCTCCTTTGGCAAATGGTTCTTATACCT
GGTCCAACCTTAGGGACCCCCTAATGCTCTCAAGGCTAG
Protein sequenceShow/hide protein sequence
LKILAWNVRGIGSTQKRAQIKNGISDYAPDFVCLFETKLLNLNNKLVKSIWSSISIKYLFKQAIGRSGGILLMWDDLKHQLINSVIGEFTITTNFVEPDGYNWWITSVYG
PVNRNRRKSFRELMNLAPTCGSNWLLAGDFNVIRWSNETSSSSPSKYSMAKFNSLILNLGLIDPPLANGSYTWSNLRDPLMLSRLX