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Chy11G191890 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G191890
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionhigh mobility group B protein 3-like
Genome locationchrH11:7149858..7150796
RNA-Seq ExpressionChy11G191890
SyntenyChy11G191890
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053151.1 HMG1/2-like protein isoform X1 [Cucumis melo var. makuwa]5.77e-5981.4Show/hide
Query:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAERALKRKAEYEIALEAYKNNLNC----
        MKSTKSK KDQNAPKRPATAFFVFMEEFR  FKEQFPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAE+ALKRKAEYEIALEAYKNN NC    
Subjt:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAERALKRKAEYEIALEAYKNNLNC----

Query:  PQNHKMPTESQKSTTEVNDDTEQEASSSS
            +MPTESQKST+EVND+TEQEASSSS
Subjt:  PQNHKMPTESQKSTTEVNDDTEQEASSSS

TYK24219.1 high mobility group B protein 1-like isoform X2 [Cucumis melo var. makuwa]1.39e-6287.6Show/hide
Query:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNC----PQNHKMPT
        MKSTKSK KDQNAPKRPATAFFVFMEEFR  FKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAE+ALKRKAEYEIALEAYKNN NC        +MPT
Subjt:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNC----PQNHKMPT

Query:  ESQKSTTEVNDDTEQEASSSS
        ESQKST+EVNDDTEQEASSSS
Subjt:  ESQKSTTEVNDDTEQEASSSS

XP_008455869.1 PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo]3.18e-5982.17Show/hide
Query:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAERALKRKAEYEIALEAYKNNLNC----
        MKSTKSK KDQNAPKRPATAFFVFMEEFR  FKEQFPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAE+ALKRKAEYEIALEAYKNN NC    
Subjt:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAERALKRKAEYEIALEAYKNNLNC----

Query:  PQNHKMPTESQKSTTEVNDDTEQEASSSS
            +MPTESQKST+EVNDDTEQEASSSS
Subjt:  PQNHKMPTESQKSTTEVNDDTEQEASSSS

XP_008455870.1 PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo]3.13e-6287.6Show/hide
Query:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNC----PQNHKMPT
        MKSTKSK KDQNAPKRPATAFFVFMEEFR  FKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAE+ALKRKAEYEIALEAYKNN NC        +MPT
Subjt:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNC----PQNHKMPT

Query:  ESQKSTTEVNDDTEQEASSSS
        ESQKST+EVNDDTEQEASSSS
Subjt:  ESQKSTTEVNDDTEQEASSSS

XP_031737208.1 high mobility group B protein 3-like isoform X2 [Cucumis sativus]3.26e-7094.02Show/hide
Query:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQK
        MKSTKSK KDQNAPKRPAT FFVFMEEFRKT+KEQFPDAKAGPVVGK GGEKWKSMSDAEKAPYAE+ALKRKAEYEIALEAYKNNLNCPQNH+MPTESQK
Subjt:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQK

Query:  STTEVNDDTEQEASSSS
        ST+EVNDDTEQEASSSS
Subjt:  STTEVNDDTEQEASSSS

TrEMBL top hitse value%identityAlignment
A0A1S3C1W5 HMG1/2-like protein isoform X18.0e-4582.17Show/hide
Query:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAERALKRKAEYEIALEAYKNNLNC----
        MKSTKSK KDQNAPKRPATAFFVFMEEFR  FKEQFPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAE+ALKRKAEYEIALEAYKNN NC    
Subjt:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAERALKRKAEYEIALEAYKNNLNC----

Query:  PQNHKMPTESQKSTTEVNDDTEQEASSSS
            +MPTESQKST+EVNDDTEQEASSSS
Subjt:  PQNHKMPTESQKSTTEVNDDTEQEASSSS

A0A1S3C2L9 high mobility group B protein 1-like isoform X25.0e-4787.6Show/hide
Query:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNC----PQNHKMPT
        MKSTKSK KDQNAPKRPATAFFVFMEEFR  FKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAE+ALKRKAEYEIALEAYKNN NC        +MPT
Subjt:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNC----PQNHKMPT

Query:  ESQKSTTEVNDDTEQEASSSS
        ESQKST+EVNDDTEQEASSSS
Subjt:  ESQKSTTEVNDDTEQEASSSS

A0A5A7UHY3 HMG1/2-like protein isoform X12.3e-4481.4Show/hide
Query:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAERALKRKAEYEIALEAYKNNLNC----
        MKSTKSK KDQNAPKRPATAFFVFMEEFR  FKEQFPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAE+ALKRKAEYEIALEAYKNN NC    
Subjt:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAERALKRKAEYEIALEAYKNNLNC----

Query:  PQNHKMPTESQKSTTEVNDDTEQEASSSS
            +MPTESQKST+EVND+TEQEASSSS
Subjt:  PQNHKMPTESQKSTTEVNDDTEQEASSSS

A0A5D3DLQ9 High mobility group B protein 1-like isoform X25.0e-4787.6Show/hide
Query:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNC----PQNHKMPT
        MKSTKSK KDQNAPKRPATAFFVFMEEFR  FKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAE+ALKRKAEYEIALEAYKNN NC        +MPT
Subjt:  MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNC----PQNHKMPT

Query:  ESQKSTTEVNDDTEQEASSSS
        ESQKST+EVNDDTEQEASSSS
Subjt:  ESQKSTTEVNDDTEQEASSSS

A0A6J1CIL2 high mobility group B protein 3-like5.4e-4179.66Show/hide
Query:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHK--MPTESQ
        KS KS  KDQNAPKRPATAFF+FMEEFRKTFKE+FPDAKAGP VGKAGGEKWKS+SDAEKAPYAE+AL RK EY IALEAYK  LNC  + +  MPTESQ
Subjt:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHK--MPTESQ

Query:  KSTTEVNDDTEQEASSSS
        KST+EV+DD +QEASSSS
Subjt:  KSTTEVNDDTEQEASSSS

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 17.5e-2455.05Show/hide
Query:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS
        +  K   KD N PKR  +AFFVF+E+FR TFK++ P+ KA   VGKAGG+KWKSMS AEKAPY E+A KRKAEYE  ++AY  NL      +   ES+KS
Subjt:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS

Query:  TTEVNDDTE
         +E+ND+ E
Subjt:  TTEVNDDTE

O49596 High mobility group B protein 26.3e-2354.05Show/hide
Query:  KSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKSTTE
        K+  KD N PKRPA+AFFVFME+FR+TFK++ P  K+   VGKA G+KWKS+SD+EKAPY  +A KRK EYE  ++AY   L   +  K   ES KS +E
Subjt:  KSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKSTTE

Query:  VNDDTEQEASS
        VND+ + E  S
Subjt:  VNDDTEQEASS

P26585 HMG1/2-like protein2.0e-2153.27Show/hide
Query:  KDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKSTTEVNDD
        KD N PKRP +AFFVFMEEFRK F ++ P+ KA   VGKA G KWK+MSDAEKAPY  ++ KRK EYE  + AY              ES+KS +EVND+
Subjt:  KDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKSTTEVNDD

Query:  TEQEASS
         + E  S
Subjt:  TEQEASS

P40619 HMG1/2-like protein1.1e-2254.39Show/hide
Query:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS
        K TK   KD N PKRP +AFFVFME+FRKT+KE+ P+ K+  VVGKAGG+KWK ++ AEKAP+  +A KRK EYE  L+AY  N           ES KS
Subjt:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS

Query:  TTEVNDDTEQEASS
         +EVNDD E +  S
Subjt:  TTEVNDDTEQEASS

P93047 High mobility group B protein 39.8e-2454.39Show/hide
Query:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS
        K  K   KD N PKRP++AFFVFME+FR T+KE+ P  K+   VGKAGGEKWKS+SD+EKAPY  +A KRK EYE  ++AY   L   +  K   ES KS
Subjt:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS

Query:  TTEVNDDTEQEASS
         +EVND+ + E  S
Subjt:  TTEVNDDTEQEASS

Arabidopsis top hitse value%identityAlignment
AT1G20696.1 high mobility group B36.9e-2554.39Show/hide
Query:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS
        K  K   KD N PKRP++AFFVFME+FR T+KE+ P  K+   VGKAGGEKWKS+SD+EKAPY  +A KRK EYE  ++AY   L   +  K   ES KS
Subjt:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS

Query:  TTEVNDDTEQEASS
         +EVND+ + E  S
Subjt:  TTEVNDDTEQEASS

AT3G51880.1 high mobility group B15.3e-2555.05Show/hide
Query:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS
        +  K   KD N PKR  +AFFVF+E+FR TFK++ P+ KA   VGKAGG+KWKSMS AEKAPY E+A KRKAEYE  ++AY  NL      +   ES+KS
Subjt:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS

Query:  TTEVNDDTE
         +E+ND+ E
Subjt:  TTEVNDDTE

AT3G51880.2 high mobility group B15.3e-2555.05Show/hide
Query:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS
        +  K   KD N PKR  +AFFVF+E+FR TFK++ P+ KA   VGKAGG+KWKSMS AEKAPY E+A KRKAEYE  ++AY  NL      +   ES+KS
Subjt:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS

Query:  TTEVNDDTE
         +E+ND+ E
Subjt:  TTEVNDDTE

AT3G51880.3 high mobility group B15.3e-2555.05Show/hide
Query:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS
        +  K   KD N PKR  +AFFVF+E+FR TFK++ P+ KA   VGKAGG+KWKSMS AEKAPY E+A KRKAEYE  ++AY  NL      +   ES+KS
Subjt:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS

Query:  TTEVNDDTE
         +E+ND+ E
Subjt:  TTEVNDDTE

AT3G51880.4 high mobility group B15.3e-2555.05Show/hide
Query:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS
        +  K   KD N PKR  +AFFVF+E+FR TFK++ P+ KA   VGKAGG+KWKSMS AEKAPY E+A KRKAEYE  ++AY  NL      +   ES+KS
Subjt:  KSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKS

Query:  TTEVNDDTE
         +E+ND+ E
Subjt:  TTEVNDDTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCCACGAAAAGCAAGAACAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAAAGACGTTTAAGGAGCAATTTCC
TGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTATGCTGAAAGAGCTTTAAAAAGAAAGGCAG
AGTATGAAATAGCTCTTGAAGCATACAAGAACAACCTCAATTGCCCTCAGAATCACAAAATGCCAACAGAATCACAGAAATCAACCACTGAGGTCAATGATGACACAGAG
CAGGAAGCTAGCTCTAGCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATCCACGAAAAGCAAGAACAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAAAGACGTTTAAGGAGCAATTTCC
TGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTATGCTGAAAGAGCTTTAAAAAGAAAGGCAG
AGTATGAAATAGCTCTTGAAGCATACAAGAACAACCTCAATTGCCCTCAGAATCACAAAATGCCAACAGAATCACAGAAATCAACCACTGAGGTCAATGATGACACAGAG
CAGGAAGCTAGCTCTAGCTCTTAG
Protein sequenceShow/hide protein sequence
MKSTKSKNKDQNAPKRPATAFFVFMEEFRKTFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAERALKRKAEYEIALEAYKNNLNCPQNHKMPTESQKSTTEVNDDTE
QEASSSS