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Chy11G192270 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G192270
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGlycine-rich RNA-binding protein 3
Genome locationchrH11:7767198..7768538
RNA-Seq ExpressionChy11G192270
SyntenyChy11G192270
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034781.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa]3.42e-6794.59Show/hide
Query:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDA
        MMSNTNT +LLARKALTNIQTPIL FRCFCSQS SALSSSPSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FANENDA
Subjt:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDA

Query:  QCAKDAMDGKA
        QCAKDAMDGKA
Subjt:  QCAKDAMDGKA

XP_008455929.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo]6.38e-6794.59Show/hide
Query:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDA
        MMSNTNT +LLARKALTNIQTPIL FRCFCSQS SALSSSPSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FANENDA
Subjt:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDA

Query:  QCAKDAMDGKA
        QCAKDAMDGKA
Subjt:  QCAKDAMDGKA

XP_022944150.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]1.67e-5984.35Show/hide
Query:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSIS----ALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFAN
        MMSN N  +LLAR+ALTNIQTP+L FRCFCSQS S    A SSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N
Subjt:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSIS----ALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFAN

Query:  ENDAQCAKDAMDGKA
        E+DAQ AKDAMDGKA
Subjt:  ENDAQCAKDAMDGKA

XP_022986397.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]1.73e-5984.35Show/hide
Query:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSIS----ALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFAN
        MMSN N  +LLAR+ALTNIQTP+L FRCFCSQS S    A SSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N
Subjt:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSIS----ALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFAN

Query:  ENDAQCAKDAMDGKA
        E+DAQ AKDAMDGKA
Subjt:  ENDAQCAKDAMDGKA

XP_031736490.1 glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus]6.14e-6594.55Show/hide
Query:  MSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQ
        MSNTNTF+LLARKALTNIQTP LGFRCFCSQS S LSSSPS PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFAN NDAQ
Subjt:  MSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQ

Query:  CAKDAMDGKA
        CAKDAMDGKA
Subjt:  CAKDAMDGKA

TrEMBL top hitse value%identityAlignment
A0A0A0LQB7 RRM domain-containing protein3.0e-4994.55Show/hide
Query:  MSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQ
        MSNTNTF+LLARKALTNIQTP LGFRCFCSQS S LSSSPS PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFAN NDAQ
Subjt:  MSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQ

Query:  CAKDAMDGKA
        CAKDAMDGKA
Subjt:  CAKDAMDGKA

A0A1S3C2R4 glycine-rich RNA-binding protein 3, mitochondrial1.2e-5094.59Show/hide
Query:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDA
        MMSNTNT +LLARKALTNIQTPIL FRCFCSQS SALSSSPSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FANENDA
Subjt:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDA

Query:  QCAKDAMDGKA
        QCAKDAMDGKA
Subjt:  QCAKDAMDGKA

A0A5D3CH06 Glycine-rich RNA-binding protein 31.2e-5094.59Show/hide
Query:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDA
        MMSNTNT +LLARKALTNIQTPIL FRCFCSQS SALSSSPSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FANENDA
Subjt:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDA

Query:  QCAKDAMDGKA
        QCAKDAMDGKA
Subjt:  QCAKDAMDGKA

A0A6J1FYH8 glycine-rich RNA-binding protein 4, mitochondrial-like7.7e-4584.35Show/hide
Query:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQS----ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFAN
        MMSN N  +LLAR+ALTNIQTP+L FRCFCSQS     SA SSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N
Subjt:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQS----ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFAN

Query:  ENDAQCAKDAMDGKA
        E+DAQ AKDAMDGKA
Subjt:  ENDAQCAKDAMDGKA

A0A6J1J7F1 glycine-rich RNA-binding protein 4, mitochondrial-like7.7e-4584.35Show/hide
Query:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQS----ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFAN
        MMSN N  +LLAR+ALTNIQTP+L FRCFCSQS     SA SSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N
Subjt:  MMSNTNTFVLLARKALTNIQTPILGFRCFCSQS----ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFAN

Query:  ENDAQCAKDAMDGKA
        E+DAQ AKDAMDGKA
Subjt:  ENDAQCAKDAMDGKA

SwissProt top hitse value%identityAlignment
P39697 40S ribosomal protein S19, mitochondrial1.5e-1350.65Show/hide
Query:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK
        +S++  S    + KL++ GLS   DE SLKDAFSSF  VTE R++ +K +GRSRG+GFVNF +E+ A  A  AM+G+
Subjt:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial1.8e-1446.34Show/hide
Query:  QSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGKASH
        Q+I  +SSS      KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV F +   A  A  A+DG+  H
Subjt:  QSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGKASH

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial1.6e-1551.95Show/hide
Query:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK
        ++++  S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A   MDGK
Subjt:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial4.7e-1546.75Show/hide
Query:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK
        ++++  S    + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A   MDGK
Subjt:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK

W8E7I1 RNA-binding protein 39.8e-1350Show/hide
Query:  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGKA
        S+   KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A  A  AM+G++
Subjt:  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGKA

Arabidopsis top hitse value%identityAlignment
AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.6e-2675.34Show/hide
Query:  SSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK
        +SS ++P++KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSRGFGFV+FA E DA  AKDAMDGK
Subjt:  SSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK

AT3G23830.1 glycine-rich RNA-binding protein 41.1e-1651.95Show/hide
Query:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK
        ++++  S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A   MDGK
Subjt:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK

AT3G23830.2 glycine-rich RNA-binding protein 41.1e-1651.95Show/hide
Query:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK
        ++++  S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A   MDGK
Subjt:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK

AT4G13850.1 glycine-rich RNA-binding protein 23.3e-1646.75Show/hide
Query:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK
        ++++  S    + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A   MDGK
Subjt:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK

AT4G13850.2 glycine-rich RNA-binding protein 23.3e-1646.75Show/hide
Query:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK
        ++++  S    + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A   MDGK
Subjt:  ISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGCAACACGAACACCTTCGTACTGCTTGCCAGAAAAGCACTAACCAATATCCAAACTCCAATTCTTGGCTTTCGTTGCTTCTGTTCTCAATCCATCTCCGCTCT
CTCATCTTCTCCTTCTGCACCAAACAATAAGCTCTTCGTAGCAGGCTTGTCTTGGTCCATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTTACTG
AAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTTGGATTTGTGAACTTCGCAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAG
GCAAGTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGAGCAACACGAACACCTTCGTACTGCTTGCCAGAAAAGCACTAACCAATATCCAAACTCCAATTCTTGGCTTTCGTTGCTTCTGTTCTCAATCCATCTCCGCTCT
CTCATCTTCTCCTTCTGCACCAAACAATAAGCTCTTCGTAGCAGGCTTGTCTTGGTCCATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTTACTG
AAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTTGGATTTGTGAACTTCGCAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAG
GCAAGTCATTAA
Protein sequenceShow/hide protein sequence
MMSNTNTFVLLARKALTNIQTPILGFRCFCSQSISALSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANENDAQCAKDAMDGK
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