; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy11G192580 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G192580
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationchrH11:8486382..8488221
RNA-Seq ExpressionChy11G192580
SyntenyChy11G192580
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]5.97e-1454.41Show/hide
Query:  F*CFY*LHD*GVE--PKAIWYR----VHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS
        F CF+ L+D  ++   + +  R    V+TG + LLTL+VL +NDA+VSAGR PLRQR+WECWA PTTS
Subjt:  F*CFY*LHD*GVE--PKAIWYR----VHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.73e-1040.5Show/hide
Query:  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPT
        GQVKGVVV  IVGVV FR +  IIH+ESDL                     + P+        G I LLTLSVL +N+ VVS  R PL +        P 
Subjt:  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPT

Query:  TS*SL*TLLYWVCPTQRRFFM
           +    LYW CPTQR   M
Subjt:  TS*SL*TLLYWVCPTQRRFFM

KAA0056684.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.56e-1232.77Show/hide
Query:  LEQILMFIR*ILTKKTGQVVFSPN*ETSGFFCISECTDRVRISIWYGWKDYSIYYNFSEETLNQKKLK*VKL*GQVKGVVVLAIVGVVPFRELPHIIHRE
        LEQI +FI   L KKTGQ+VF+ N E SGF CISEC   VRISIW                                              +L     R+
Subjt:  LEQILMFIR*ILTKKTGQVVFSPN*ETSGFFCISECTDRVRISIWYGWKDYSIYYNFSEETLNQKKLK*VKL*GQVKGVVVLAIVGVVPFRELPHIIHRE

Query:  SDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*TLLYWVCPTQRRFFMCHQVYS
        S   +   V      C Y          A   R     I LLTLSVL NNDAVV     P+  R    + G      +   LY                 
Subjt:  SDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*TLLYWVCPTQRRFFMCHQVYS

Query:  *NQLASLSR*RFRQSRQIQLEKCIVCRLHAVFQSK
          +LAS S   F+QSRQIQ++K +V RLHA+F+SK
Subjt:  *NQLASLSR*RFRQSRQIQLEKCIVCRLHAVFQSK

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]6.23e-1240.5Show/hide
Query:  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPT
        GQVKGVVV  IVGVV FR +  IIH+ESDL                            YRVHT  I LLTLSVL +N+ ++S  R PL +        P 
Subjt:  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPT

Query:  TS*SL*TLLYWVCPTQRRFFM
           +    LYW C TQR   M
Subjt:  TS*SL*TLLYWVCPTQRRFFM

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]5.84e-0883.33Show/hide
Query:  PLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS
        PL TLSVL +NDAVVSAG+APLRQRRWEC  GPTTS
Subjt:  PLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein6.8e-1152.94Show/hide
Query:  F*CFY*LHD*GVE------PKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS
        F CF+ L+D  ++         +   V+TG + LLTL+VL +NDA+VSAGR PLRQR+WECWA PTTS
Subjt:  F*CFY*LHD*GVE------PKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS

A0A5A7TCY8 DNA/RNA polymerases superfamily protein4.4e-1040.5Show/hide
Query:  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPT
        GQVKGVVV  IVGVV FR +  IIH+ESDL                     + P+        G I LLTLSVL +N+ VVS  R PL +        P 
Subjt:  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPT

Query:  TS*SL*TLLYWVCPTQRRFFM
           +    LYW CPTQR   M
Subjt:  TS*SL*TLLYWVCPTQRRFFM

A0A5A7UNA3 Reverse transcriptase6.1e-1232.63Show/hide
Query:  LEQILMFIR*ILTKKTGQVVFSPN*ETSGFFCISECTDRVRISIWYGWKDYSIYYNFSEETLNQKKLK*VKL*GQVKGVVVLAIVGVVPFRELPHIIHRE
        LEQI +FI   L KKTGQ+VF+ N E SGF CISEC   VRISIW                                              +L     R+
Subjt:  LEQILMFIR*ILTKKTGQVVFSPN*ETSGFFCISECTDRVRISIWYGWKDYSIYYNFSEETLNQKKLK*VKL*GQVKGVVVLAIVGVVPFRELPHIIHRE

Query:  SDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*TLLYWVCPTQRRFFMCHQVYS
        S   +   V      C Y          A   R     I LLTLSVL NNDAVV     P+  R    + G      +   LY                 
Subjt:  SDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*TLLYWVCPTQRRFFMCHQVYS

Query:  *NQLASLSR*RFRQSRQIQLEKCIVCRLHAVFQSKL
          +LAS S   F+QSRQIQ++K +V RLHA+F+SK+
Subjt:  *NQLASLSR*RFRQSRQIQLEKCIVCRLHAVFQSKL

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein3.1e-1140.5Show/hide
Query:  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPT
        GQVKGVVV  IVGVV FR +  IIH+ESDL                            YRVHT  I LLTLSVL +N+ ++S  R PL +        P 
Subjt:  GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*FF*CFY*LHD*GVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPT

Query:  TS*SL*TLLYWVCPTQRRFFM
           +    LYW C TQR   M
Subjt:  TS*SL*TLLYWVCPTQRRFFM

A0A5D3BTP3 Reverse transcriptase2.0e-0783.33Show/hide
Query:  PLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS
        PL TLSVL +NDAVVSAG+APLRQRRWEC  GPTTS
Subjt:  PLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGAGCAAATTCTGATGTTTATTAGGTGAATTTTGACAAAGAAAACAGGGCAGGTGGTTTTCTCGCCAAATTAGGAGACCTCTGGGTTTTTTTGTATTTCAGAGTGTAC
CGATAGAGTTAGGATCTCTATTTGGTATGGTTGGAAAGATTATTCAATTTACTACAACTTTTCTGAAGAAACCTTGAACCAAAAAAAACTAAAATAAGTGAAATTGTAGG
GACAAGTTAAAGGGGTCGTGGTACTTGCGATTGTTGGAGTGGTTCCGTTTCGAGAGCTACCTCATATTATACATAGGGAATCAGATTTACCTGCATGTTTTAATGTTTTC
GTATGATTTTTCTGATGTTTCTATTAACTACATGACTGAGGTGTTGAGCCCAAGGCTATATGGTACCGTGTGCACACAGGTTAGATTCCGTTGTTGACGTTGAGTGTACT
CCATAACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTGCGACAAAGACGATGGGAGTGCTGGGCGGGTCCCACTACATCATAGAGCTTGTAAACGTTGTTGTACT
GGGTGTGCCCTACACAACGTAGATTTTTCATGTGTCACCAGGTTTACTCGTGAAATCAATTAGCAAGTTTATCACGATAAAGATTTCGCCAGAGTCGGCAGATACAGTTA
GAGAAATGCATTGTCTGTCGGCTTCACGCCGTCTTTCAATCTAAGCTAG
mRNA sequenceShow/hide mRNA sequence
CTTGAGCAAATTCTGATGTTTATTAGGTGAATTTTGACAAAGAAAACAGGGCAGGTGGTTTTCTCGCCAAATTAGGAGACCTCTGGGTTTTTTTGTATTTCAGAGTGTAC
CGATAGAGTTAGGATCTCTATTTGGTATGGTTGGAAAGATTATTCAATTTACTACAACTTTTCTGAAGAAACCTTGAACCAAAAAAAACTAAAATAAGTGAAATTGTAGG
GACAAGTTAAAGGGGTCGTGGTACTTGCGATTGTTGGAGTGGTTCCGTTTCGAGAGCTACCTCATATTATACATAGGGAATCAGATTTACCTGCATGTTTTAATGTTTTC
GTATGATTTTTCTGATGTTTCTATTAACTACATGACTGAGGTGTTGAGCCCAAGGCTATATGGTACCGTGTGCACACAGGTTAGATTCCGTTGTTGACGTTGAGTGTACT
CCATAACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTGCGACAAAGACGATGGGAGTGCTGGGCGGGTCCCACTACATCATAGAGCTTGTAAACGTTGTTGTACT
GGGTGTGCCCTACACAACGTAGATTTTTCATGTGTCACCAGGTTTACTCGTGAAATCAATTAGCAAGTTTATCACGATAAAGATTTCGCCAGAGTCGGCAGATACAGTTA
GAGAAATGCATTGTCTGTCGGCTTCACGCCGTCTTTCAATCTAAGCTAG
Protein sequenceShow/hide protein sequence
LEQILMFIRILTKKTGQVVFSPN*ETSGFFCISECTDRVRISIWYGWKDYSIYYNFSEETLNQKKLKVKL*GQVKGVVVLAIVGVVPFRELPHIIHRESDLPACFNVFV*
FF*CFY*LHDGVEPKAIWYRVHTG*IPLLTLSVLHNNDAVVSAGRAPLRQRRWECWAGPTTS*SL*TLLYWVCPTQRRFFMCHQVYSNQLASLSR*RFRQSRQIQLEKCI
VCRLHAVFQSKLX