; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy11G192630 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G192630
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchrH11:8598890..8599867
RNA-Seq ExpressionChy11G192630
SyntenyChy11G192630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056398.1 putative integrase, identical [Cucumis melo var. makuwa]3.56e-0775.76Show/hide
Query:  GPHFHKDDGSVRRAPLHRRACKRCCTGCALHNV
        G H+ KDDGSV RAPLHRRACKRCCTG + H+V
Subjt:  GPHFHKDDGSVRRAPLHRRACKRCCTGCALHNV

TYJ96574.1 uncharacterized protein E5676_scaffold791G00040 [Cucumis melo var. makuwa]8.63e-0535.65Show/hide
Query:  VSINYMTEVLSPRLYGTVCTQVRFRC*R*GYSVTTMLS*VLGGPHFHKDDGSVRRAPLHRRACKRCCTGCALHNVDL*RSSFRCLINCLSLLKLRYRLPV
        +SI+YMTE+LS RLYGTVCTQ+ F       S  ++L          +D+                       N  +  SS+ CLI+C  LLK+  + PV
Subjt:  VSINYMTEVLSPRLYGTVCTQVRFRC*R*GYSVTTMLS*VLGGPHFHKDDGSVRRAPLHRRACKRCCTGCALHNVDL*RSSFRCLINCLSLLKLRYRLPV

Query:  RG*SCV*SLLFYVRC
        RG SC+ S LF ++C
Subjt:  RG*SCV*SLLFYVRC

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]2.53e-0441.03Show/hide
Query:  DVSINYMTEVLSPRLYGTVCTQVRFRC*R*GYSVTTMLS*VLGGPHFHKDDGSVRRAPLHRRACKRC-CTGCALHNVD
        ++SI+YMTE+LS RLYGTVC QV F                +G  H+ KDDG V   P +        CTG  LH++D
Subjt:  DVSINYMTEVLSPRLYGTVCTQVRFRC*R*GYSVTTMLS*VLGGPHFHKDDGSVRRAPLHRRACKRC-CTGCALHNVD

TYK11693.1 gag protease polyprotein [Cucumis melo var. makuwa]3.69e-0471.88Show/hide
Query:  MFSYDFSDVSINYMTEVLSPRLYGTVCTQVRF
        MFS DF+++SI+Y+TE+LS RLYGTVCTQV F
Subjt:  MFSYDFSDVSINYMTEVLSPRLYGTVCTQVRF

TYK29120.1 hypothetical protein E5676_scaffold120G002610 [Cucumis melo var. makuwa]3.53e-0775.76Show/hide
Query:  GPHFHKDDGSVRRAPLHRRACKRCCTGCALHNV
        G H+ KDDGSV RAPLHRRACKRCCTG + H+V
Subjt:  GPHFHKDDGSVRRAPLHRRACKRCCTGCALHNV

TrEMBL top hitse value%identityAlignment
A0A5A7UMS5 Putative integrase, identical7.2e-0675.76Show/hide
Query:  GPHFHKDDGSVRRAPLHRRACKRCCTGCALHNV
        G H+ KDDGSV RAPLHRRACKRCCTG + H+V
Subjt:  GPHFHKDDGSVRRAPLHRRACKRCCTGCALHNV

A0A5D3E0T4 CCHC-type domain-containing protein7.2e-0675.76Show/hide
Query:  GPHFHKDDGSVRRAPLHRRACKRCCTGCALHNV
        G H+ KDDGSV RAPLHRRACKRCCTG + H+V
Subjt:  GPHFHKDDGSVRRAPLHRRACKRCCTGCALHNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCGTATGATTTTTCTGATGTTTCTATTAACTACATGACTGAGGTGTTGAGCCCAAGGCTATATGGTACCGTGTGCACACAGGTTAGATTTCGTTGTTGACGTTG
AGGGTATTCCGTAACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTTCCACAAAGATGATGGGAGTGTTAGGCGGGCCCCACTACATCGTAGAGCTTGTAAACGTT
GTTGTACTGGGTGTGCCCTACACAACGTAGATTTGTAGAGATCGAGTTTCAGGTGCCTGATAAACTGCCTTAGTCTGCTGAAGCTCCGATATCGATTGCCAGTACGTGGT
TAGAGTTGTGTATAGAGTCTGTTGTTTTATGTAAGGTGTCATCAGGAATCGCTAGAAAAGCATTGTCTGTCGGCTTCACGCCGTCTTTCGGTCTAAGCTAGCAGGTAGTC
CGGGAGGGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCGTATGATTTTTCTGATGTTTCTATTAACTACATGACTGAGGTGTTGAGCCCAAGGCTATATGGTACCGTGTGCACACAGGTTAGATTTCGTTGTTGACGTTG
AGGGTATTCCGTAACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTTCCACAAAGATGATGGGAGTGTTAGGCGGGCCCCACTACATCGTAGAGCTTGTAAACGTT
GTTGTACTGGGTGTGCCCTACACAACGTAGATTTGTAGAGATCGAGTTTCAGGTGCCTGATAAACTGCCTTAGTCTGCTGAAGCTCCGATATCGATTGCCAGTACGTGGT
TAGAGTTGTGTATAGAGTCTGTTGTTTTATGTAAGGTGTCATCAGGAATCGCTAGAAAAGCATTGTCTGTCGGCTTCACGCCGTCTTTCGGTCTAAGCTAGCAGGTAGTC
CGGGAGGGGGTAG
Protein sequenceShow/hide protein sequence
MFSYDFSDVSINYMTEVLSPRLYGTVCTQVRFRCR*GYSVTTMLS*VLGGPHFHKDDGSVRRAPLHRRACKRCCTGCALHNVDLRSSFRCLINCLSLLKLRYRLPVRG*S
CV*SLLFYVRCHQESLEKHCLSASRRLSVASR*SGRG*