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Chy11G192860 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G192860
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionProtein FAR1-RELATED SEQUENCE 4
Genome locationchrH11:8999784..9000395
RNA-Seq ExpressionChy11G192860
SyntenyChy11G192860
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.03e-4077.89Show/hide
Query:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII
        T+HSIPKEI+HKACTN+GVNISYQK WRAKEH+VKIL+GD V SY LI RFFNKLVE N      LE+ DSGLFKFCFMAF ASIEG KYCRPII
Subjt:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII

KAA0037812.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]4.51e-4172.16Show/hide
Query:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPIIFL
        TN SIP EI+HKA TN+G+NISYQKAWRAKEH+VKIL GD V SY LI RFF+KLVE N      LE+ DSG FKFCFMAFGASIEG KYC+PII++
Subjt:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPIIFL

KAA0041797.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa]4.31e-3973.4Show/hide
Query:  NHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII
        + SI KEI+HK  TN+GVNISYQKAWRAKEH+VKIL GD V SY LI RFF+KLVE N      LEI D G FKFCFMAFGASIEG KYCRPII
Subjt:  NHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII

KAA0047748.1 uncharacterized protein E6C27_scaffold1059G00070 [Cucumis melo var. makuwa]1.63e-3972.63Show/hide
Query:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII
        T+ SIPKEI+HKACTN+GVN SYQKAWRAKEH+VKIL GD V  Y LI RFF+KLVE N      LE+ D+G FKFCFM FGASIEG KYCRPII
Subjt:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII

TYK02872.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]5.43e-4272.16Show/hide
Query:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPIIFL
        TN SIP EI+HKA TN+G+NISYQKAWRAKEH+VKIL GD V SY LI RFF+KLVE N      LE+ DSG FKFCFMAFGASIEG KYC+PII++
Subjt:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPIIFL

TrEMBL top hitse value%identityAlignment
A0A5A7T2W2 Protein FAR1-RELATED SEQUENCE 45.5e-3172.16Show/hide
Query:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPIIFL
        TN SIP EI+HKA TN+G+NISYQKAWRAKEH+VKIL GD V SY LI RFF+KLVE N      LE+ DSG FKFCFMAFGASIEG KYC+PII++
Subjt:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPIIFL

A0A5A7T6M8 DNA/RNA polymerases superfamily protein1.5e-3377.89Show/hide
Query:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII
        T+HSIPKEI+HKACTN+GVNISYQK WRAKEH+VKIL+GD V SY LI RFFNKLVE N      LE+ DSGLFKFCFMAF ASIEG KYCRPII
Subjt:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII

A0A5A7V9D5 SWIM-type domain-containing protein1.0e-2976.09Show/hide
Query:  SIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII
        SIPKEI+HKA TN+ VNISYQKAWRAKEH++KIL GD V SY LI RFF+KLVE N      LEI DSG FKFCFMAFGASIEG KYCRPII
Subjt:  SIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII

A0A5D3BUA2 MULE domain-containing protein2.7e-3072.63Show/hide
Query:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII
        T+ SIPKEI+HKACTN+GVN SYQKAWRAKEH+VKIL GD V  Y LI RFF+KLVE N      LE+ D+G FKFCFM FGASIEG KYCRPII
Subjt:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPII

A0A5D3BVN2 Protein FAR1-RELATED SEQUENCE 45.5e-3172.16Show/hide
Query:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPIIFL
        TN SIP EI+HKA TN+G+NISYQKAWRAKEH+VKIL GD V SY LI RFF+KLVE N      LE+ DSG FKFCFMAFGASIEG KYC+PII++
Subjt:  TNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECN------LEIVDSGLFKFCFMAFGASIEG*KYCRPIIFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATACCTACTAATCATTCCATTCCAAAAGAGATTATCCATAAGGCTTGTACAAATGTTGGAGTTAATATAAGTTATCAAAAAGCTTGGAGGGCAAAAGAACACATAGTAAA
GATATTAAAAGGAGATGCAGTTGCATCGTACACTTTGATTTCAAGATTCTTTAATAAATTAGTTGAATGTAACCTAGAGATTGTTGATAGCGGTCTTTTCAAGTTCTGCT
TTATGGCTTTTGGTGCATCAATTGAGGGATGAAAATACTGTAGACCTATCATTTTTTTATAGCACTTTTGTGAAG
mRNA sequenceShow/hide mRNA sequence
ATACCTACTAATCATTCCATTCCAAAAGAGATTATCCATAAGGCTTGTACAAATGTTGGAGTTAATATAAGTTATCAAAAAGCTTGGAGGGCAAAAGAACACATAGTAAA
GATATTAAAAGGAGATGCAGTTGCATCGTACACTTTGATTTCAAGATTCTTTAATAAATTAGTTGAATGTAACCTAGAGATTGTTGATAGCGGTCTTTTCAAGTTCTGCT
TTATGGCTTTTGGTGCATCAATTGAGGGATGAAAATACTGTAGACCTATCATTTTTTTATAGCACTTTTGTGAAG
Protein sequenceShow/hide protein sequence
IPTNHSIPKEIIHKACTNVGVNISYQKAWRAKEHIVKILKGDAVASYTLISRFFNKLVECNLEIVDSGLFKFCFMAFGASIEGKYCRPIIFL*HFCEX