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Chy11G192890 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G192890
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
Genome locationchrH11:9022245..9036500
RNA-Seq ExpressionChy11G192890
SyntenyChy11G192890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025502.1 retrotransposon protein [Cucumis melo var. makuwa]2.08e-4548.91Show/hide
Query:  QRSCPTLIFKDCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADV
        Q    T+I  DCR+      + K+T+QAI +MRG+ CSGFG N+E +CII E++LFD+WV+SH  AKGLL K F YY++L+YVFG+D ATG  +ETF DV
Subjt:  QRSCPTLIFKDCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADV

Query:  RSYVPNNLIDDVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ*RQL
         S  P    D   +GD  ++D  P+YS G+D+S +++  ++ SR+SEGR  SS SKRK+G Q Y  VE I  A+   N+Q RQ+
Subjt:  RSYVPNNLIDDVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ*RQL

KAA0025744.1 retrotransposon protein [Cucumis melo var. makuwa]2.42e-4650Show/hide
Query:  QRSCPTLIFKDCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADV
        Q    T+I  DCR+      + K+T+QAI +MRG   SGFG N+E +CII E++LFD+WV+SH  AKGLL+K FSYY++L+YVFG+D ATG  +ETFADV
Subjt:  QRSCPTLIFKDCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADV

Query:  RSYVPNNLIDDVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ*RQL
        RS  P  + D   +GD  ++D  P+YS G+D+S +++  +R SR+SEGR  SS SKRK+G Q    VE I  A++  N+Q RQ+
Subjt:  RSYVPNNLIDDVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ*RQL

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]2.70e-5149.52Show/hide
Query:  AWWNWFHLVDKGQIMGHFDLGT*PNYNV*WQRSCPTLIFKDCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLL
        AWWNWFHL D G IMGHF+L                                        +MRG  CSGFG NEE+QCII ER LFDSWVKSH   KGLL
Subjt:  AWWNWFHLVDKGQIMGHFDLGT*PNYNV*WQRSCPTLIFKDCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLL

Query:  HKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLIDDVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVI
        HK F YY+DLSYVFGKD ATGARSETF DV S VPN   D +PLGD HD+DI  MYS GV +SP+EM   RA                         EVI
Subjt:  HKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLIDDVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVI

Query:  RNAMEFANDQ
        R+ MEF N+Q
Subjt:  RNAMEFANDQ

TYK06175.1 retrotransposon protein [Cucumis melo var. makuwa]2.42e-4650Show/hide
Query:  QRSCPTLIFKDCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADV
        Q    T+I  DCR+      + K+T+QAI +MRG   SGFG N+E +CII E++LFD+WV+SH  AKGLL+K FSYY++L+YVFG+D ATG  +ETFADV
Subjt:  QRSCPTLIFKDCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADV

Query:  RSYVPNNLIDDVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ*RQL
        RS  P  + D   +GD  ++D  P+YS G+D+S +++  +R SR+SEGR  SS SKRK+G Q    VE I  A++  N+Q RQ+
Subjt:  RSYVPNNLIDDVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ*RQL

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.67e-6465.29Show/hide
Query:  DCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLID
        DC +      S KKTY AI +MRG  CSGFG NEE+QCII ER LFDSW+KSH  AKGLLHK F YY+DLSYVFGKD ATGARSETF +V S V N   D
Subjt:  DCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLID

Query:  DVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ
         +PLGD HD+DI  MYS GV MSP+EM   RA ++SE RN SS SKRK+G + YETVEVIR+ MEF N+Q
Subjt:  DVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.7e-5368.12Show/hide
Query:  SFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLIDDVPLGDLHDQ
        S KKTY AI +MRG  CSGFG NEE+QCII ER LFDSW+KSH  AKGLLHK F YY+DLSYVFGKD ATGARSETF +V S V N   D +PLGD HD+
Subjt:  SFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLIDDVPLGDLHDQ

Query:  DISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ
        DI  MYS GV MSP+EM   RA ++SE RN SS SKRK+G + YETVEVIR+ MEF N+Q
Subjt:  DISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ

A0A5A7SJA5 Retrotransposon protein3.2e-3951.15Show/hide
Query:  DCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLID
        DCR+      + K+T+QAI +MRG   SGFG N+E +CII E++LFD+WV+SH  AKGLL+K FSYY++L+YVFG+D ATG  +ETFADVRS  P  + D
Subjt:  DCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLID

Query:  DVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ*RQL
           +GD  ++D  P+YS G+D+S +++  +R SR+SEGR  SS SKRK+G Q    VE I  A++  N+Q RQ+
Subjt:  DVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ*RQL

A0A5A7U0H7 Retrotransposon protein1.7e-5368.12Show/hide
Query:  SFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLIDDVPLGDLHDQ
        S KKTY AI +MRG  CSGFG NEE+QCII ER LFDSW+KSH  AKGLLHK F YY+DLSYVFGKD ATGARSETF +V S V N   D +PLGD HD+
Subjt:  SFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLIDDVPLGDLHDQ

Query:  DISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ
        DI  MYS GV MSP+EM   RA ++SE RN SS SKRK+G + YETVEVIR+ MEF N+Q
Subjt:  DISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ

A0A5D3C464 Retrotransposon protein3.2e-3951.15Show/hide
Query:  DCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLID
        DCR+      + K+T+QAI +MRG   SGFG N+E +CII E++LFD+WV+SH  AKGLL+K FSYY++L+YVFG+D ATG  +ETFADVRS  P  + D
Subjt:  DCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLID

Query:  DVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ*RQL
           +GD  ++D  P+YS G+D+S +++  +R SR+SEGR  SS SKRK+G Q    VE I  A++  N+Q RQ+
Subjt:  DVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQ*RQL

A0A5D3DG22 Retrotransposon protein8.7e-4549.52Show/hide
Query:  AWWNWFHLVDKGQIMGHFDLGT*PNYNV*WQRSCPTLIFKDCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLL
        AWWNWFHL D G IMGHF+L                                        +MRG  CSGFG NEE+QCII ER LFDSWVKSH   KGLL
Subjt:  AWWNWFHLVDKGQIMGHFDLGT*PNYNV*WQRSCPTLIFKDCRLYIFV*NSFKKTYQAIVKMRGTLCSGFG*NEEYQCIIVERKLFDSWVKSHSVAKGLL

Query:  HKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLIDDVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVI
        HK F YY+DLSYVFGKD ATGARSETF DV S VPN   D +PLGD HD+DI  MYS GV +SP+EM   RA                         EVI
Subjt:  HKLFSYYNDLSYVFGKD*ATGARSETFADVRSYVPNNLIDDVPLGDLHDQDISPMYS*GVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVI

Query:  RNAMEFANDQ
        R+ MEF N+Q
Subjt:  RNAMEFANDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTGCTTGGTGGAATTGGTTTCATTTAGTGGATAAAGGTCAGATAATGGGACATTTCGACTTGGGTACTTGACCCAATTACAACGTATGATGGCAGAGAAGTTGCCCGAC
ACTAATATTTAAGGATTGTCGACTATACATTTTCGTGTGAAATTCTTTTAAAAAAACCTACCAAGCAATTGTAAAAATGAGGGGGACATTGTGTAGTGGGTTTGGATGAA
ATGAAGAATATCAATGCATCATTGTAGAACGAAAGTTGTTTGATAGTTGGGTCAAGAGTCATTCTGTAGCCAAAGGCCTTCTACACAAATTATTTTCATATTATAATGAT
CTGTCCTATGTCTTCGGCAAAGATTGAGCAACAGGAGCACGTTCAGAGACCTTTGCTGATGTGAGATCTTATGTGCCAAACAATTTAATTGACGATGTTCCTCTTGGTGA
TTTACATGATCAAGACATCTCGCCGATGTATAGCTAAGGAGTGGATATGTCACCAAATGAGATGTTAAAAACACGTGCAAGTCGATCAAGTGAAGGAAGGAATTATTCAA
GTGAAAGTAAGAGGAAACAAGGTGGCCAACATTACGAAACTGTAGAGGTGATTAGAAATGCAATGGAATTTGCAAATGATCAATAAAGACAATTGCAGTCTGACCAAAAG
AACACCGTGCAACAAAGGTCAAATTGCTTGCTGAAGTTGTAAAACAATTGCAAGATATCCCTGATCTACGGAGCCGAGAGAGGGTAAAGCTTATGCAAATCATATTCCGT
AGTGTGAATCACATAGAGGGATTCTTATCGATTCCAACAGAACTTAAATTGGAGTATTGCAATGTTCTCTTGGAACATAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
TGTGCTTGGTGGAATTGGTTTCATTTAGTGGATAAAGGTCAGATAATGGGACATTTCGACTTGGGTACTTGACCCAATTACAACGTATGATGGCAGAGAAGTTGCCCGAC
ACTAATATTTAAGGATTGTCGACTATACATTTTCGTGTGAAATTCTTTTAAAAAAACCTACCAAGCAATTGTAAAAATGAGGGGGACATTGTGTAGTGGGTTTGGATGAA
ATGAAGAATATCAATGCATCATTGTAGAACGAAAGTTGTTTGATAGTTGGGTCAAGAGTCATTCTGTAGCCAAAGGCCTTCTACACAAATTATTTTCATATTATAATGAT
CTGTCCTATGTCTTCGGCAAAGATTGAGCAACAGGAGCACGTTCAGAGACCTTTGCTGATGTGAGATCTTATGTGCCAAACAATTTAATTGACGATGTTCCTCTTGGTGA
TTTACATGATCAAGACATCTCGCCGATGTATAGCTAAGGAGTGGATATGTCACCAAATGAGATGTTAAAAACACGTGCAAGTCGATCAAGTGAAGGAAGGAATTATTCAA
GTGAAAGTAAGAGGAAACAAGGTGGCCAACATTACGAAACTGTAGAGGTGATTAGAAATGCAATGGAATTTGCAAATGATCAATAAAGACAATTGCAGTCTGACCAAAAG
AACACCGTGCAACAAAGGTCAAATTGCTTGCTGAAGTTGTAAAACAATTGCAAGATATCCCTGATCTACGGAGCCGAGAGAGGGTAAAGCTTATGCAAATCATATTCCGT
AGTGTGAATCACATAGAGGGATTCTTATCGATTCCAACAGAACTTAAATTGGAGTATTGCAATGTTCTCTTGGAACATAATGTTTGA
Protein sequenceShow/hide protein sequence
CAWWNWFHLVDKGQIMGHFDLGTPNYNV*WQRSCPTLIFKDCRLYIFV*NSFKKTYQAIVKMRGTLCSGFGNEEYQCIIVERKLFDSWVKSHSVAKGLLHKLFSYYNDLS
YVFGKD*ATGARSETFADVRSYVPNNLIDDVPLGDLHDQDISPMYSGVDMSPNEMLKTRASRSSEGRNYSSESKRKQGGQHYETVEVIRNAMEFANDQRQLQSDQKNTVQ
QRSNCLLKL*NNCKISLIYGAERGSLCKSYSVV*IT*RDSYRFQQNLNWSIAMFSWNIMFX