; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy11G193220 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G193220
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionHistone deacetylase
Genome locationchrH11:10112595..10117065
RNA-Seq ExpressionChy11G193220
SyntenyChy11G193220
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOX98965.1 Histone deacetylase 1 isoform 5 [Theobroma cacao]2.59e-1244.86Show/hide
Query:  QELH*GWRLMIKCHNMNIMSILALITLCMLLPVIWRTKIHTKC*KKYKESCLNTFQGFSMPPVFSFKKDLLILNSQRQKKIKRIGMRDGIQTRIWKLMKR
        + LH  W+L  +C NM+IM+IL    L ML  V W+T+IH    K Y  S L   Q FSM  V +FKKD L L+  R  KI+ + MRDG Q + W+LM+ 
Subjt:  QELH*GWRLMIKCHNMNIMSILALITLCMLLPVIWRTKIHTKC*KKYKESCLNTFQGFSMPPVFSFKKDLLILNSQRQKKIKRIGMRDGIQTRIWKLMKR

Query:  ENPSKAE
         + S+AE
Subjt:  ENPSKAE
TrEMBL top hitse value%identityAlignment
A0A061E1X0 Histone deacetylase7.9e-1245.71Show/hide
Query:  LH*GWRLMIKCHNMNIMSILALITLCMLLPVIWRTKIHTKC*KKYKESCLNTFQGFSMPPVFSFKKDLLILNSQRQKKIKRIGMRDGIQTRIWKLMKREN
        LH  W+L  +C NM+IM+IL    L ML  V W+T+IH    K Y  S L   Q FSM  V +FKKD L L+  R  KI+ + MRDG Q + W+LM+  +
Subjt:  LH*GWRLMIKCHNMNIMSILALITLCMLLPVIWRTKIHTKC*KKYKESCLNTFQGFSMPPVFSFKKDLLILNSQRQKKIKRIGMRDGIQTRIWKLMKREN

Query:  PSKAE
         S+AE
Subjt:  PSKAE
A0A0A0KA89 Histone deacetylase6.1e-0462Show/hide
Query:  KFGSWIFSLLSIVRQVLWPLLQQFSR------------LWRQGGIHYHLG
        KFGSWIFSLLSIVR+VLWPLLQQFSR            L  Q  + YHLG
Subjt:  KFGSWIFSLLSIVRQVLWPLLQQFSR------------LWRQGGIHYHLG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTTTGGGAGTTGGATCTTCTCGTTGTTGAGCATAGTGAGGCAGGTATTGTGGCCGCTTCTTCAACAATTCTCGAGGTTATGGAGACAGGGGGGAATTCATTACCATCT
GGGCCTGACGGTGTGAAGAGGAAGGTCTGCTATTTCTACGACCCTGAGGTTGGGAATTACTATTATGGGCAGGGTCACCCAATGAAGCCGCATCGCATCAGAATGACACA
TGCCCTTCTTGCCCATTATGGCTTACTCCAGCATATGCAGGTCTTCAAGCCTCTTCCTGCCAGAGACAAAGTCCTCTGCAGATTTCATGCTGATGATTATGTGGCGTTTC
TTAAAAGCATTACCCCTGAAACGCAGCAAGACCAGCTGAGACAGCTTAAGCGCTTCAATGTCGGTGAGGACTGTCCTGTCTTTGATGGCCTCTATTCTTTTTGTCAGACT
TATGCTGGTGGATCTGTTGGTGGTGCCGTTAAGTTAAACCATAAGGTTTGTGATATTGCTGTTAATTGGTCTGGTGGGCTACACCATGCGAAGAAATGCGAAGCTTCTGG
GTTTTGTTATGTCAATGATATTGTTTTGGCGATACTGGAACTCCTTAAACATTATGAGCGTGTTTTATATGTTGACATTGATATCCACCATGGAGATGGTGTTGAAGAGG
CTTTTTATACAACCGACAGGGTCATGACTGTATCGTTCCACAAGTTTGGAGATTATTTTCCTGGTACAGGAGATATAAGAGACATTGGTTATGGGAAAGGAAAGTACTAC
TCCCTTAATGTTCCTTTGGATGACGGAATTGATGATGAAAGCTATCATTTCTTGTTCAAACCTATAATGGGAAAAGTTATGGAAGTTTTTAAACCTGGTGCTGTTGTTCT
CCAGTGTGGTGCTGACTCTCTTTCTGGCGATAGGCTAGGATGCTTTAACCTGTCAATAAAAGGTCATGCAGAGTGTGTTAGATATATGAGATCATTCAATGTGCCTCTAT
TACTGCTTGGTGGGGGTGGCTATACTATCCGTAATGTTGCTCGCTGCTGGTGCTACGAGACAGGAGTTGCATTAGGGATGGAGGTTGATGATAAAATGCCACAACATGAA
TATTATGAGTATTTTGGCCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACACACCAAATGTTAGAAGAAATACAAGGAAAGCTGCTTGAATA
CCTTTCAAGGCTTCAGCATGCCCCCAGTGTTCAGTTTCAAGAAAGACCTCCTGATACTGAACTCCCAGAGGCAGAAGAAGATCAAGAGGATAGGGATGAGAGATGGGATC
CAGACTCGGATATGGAAGTTGATGAAGAGAGAAAACCCATCCAAAGCAGAGTTAAAAGAGAGACAGTTGAATCTGAAATCAAAGATCCGGAAGTTAATCCGGAGAGTGCC
AGAGGTTCAGAAAAAGCAGCAGCCGAGACTACAAGCGCAAAGGCTTTAGATATAGGTTCTCTCAAAATCGAAGAGTCAGGCGTTAAACTCGAGGAGACCAGCAAGCACAA
TGACCAAATCTTCCCCTAG
mRNA sequenceShow/hide mRNA sequence
AAGTTTGGGAGTTGGATCTTCTCGTTGTTGAGCATAGTGAGGCAGGTATTGTGGCCGCTTCTTCAACAATTCTCGAGGTTATGGAGACAGGGGGGAATTCATTACCATCT
GGGCCTGACGGTGTGAAGAGGAAGGTCTGCTATTTCTACGACCCTGAGGTTGGGAATTACTATTATGGGCAGGGTCACCCAATGAAGCCGCATCGCATCAGAATGACACA
TGCCCTTCTTGCCCATTATGGCTTACTCCAGCATATGCAGGTCTTCAAGCCTCTTCCTGCCAGAGACAAAGTCCTCTGCAGATTTCATGCTGATGATTATGTGGCGTTTC
TTAAAAGCATTACCCCTGAAACGCAGCAAGACCAGCTGAGACAGCTTAAGCGCTTCAATGTCGGTGAGGACTGTCCTGTCTTTGATGGCCTCTATTCTTTTTGTCAGACT
TATGCTGGTGGATCTGTTGGTGGTGCCGTTAAGTTAAACCATAAGGTTTGTGATATTGCTGTTAATTGGTCTGGTGGGCTACACCATGCGAAGAAATGCGAAGCTTCTGG
GTTTTGTTATGTCAATGATATTGTTTTGGCGATACTGGAACTCCTTAAACATTATGAGCGTGTTTTATATGTTGACATTGATATCCACCATGGAGATGGTGTTGAAGAGG
CTTTTTATACAACCGACAGGGTCATGACTGTATCGTTCCACAAGTTTGGAGATTATTTTCCTGGTACAGGAGATATAAGAGACATTGGTTATGGGAAAGGAAAGTACTAC
TCCCTTAATGTTCCTTTGGATGACGGAATTGATGATGAAAGCTATCATTTCTTGTTCAAACCTATAATGGGAAAAGTTATGGAAGTTTTTAAACCTGGTGCTGTTGTTCT
CCAGTGTGGTGCTGACTCTCTTTCTGGCGATAGGCTAGGATGCTTTAACCTGTCAATAAAAGGTCATGCAGAGTGTGTTAGATATATGAGATCATTCAATGTGCCTCTAT
TACTGCTTGGTGGGGGTGGCTATACTATCCGTAATGTTGCTCGCTGCTGGTGCTACGAGACAGGAGTTGCATTAGGGATGGAGGTTGATGATAAAATGCCACAACATGAA
TATTATGAGTATTTTGGCCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACACACCAAATGTTAGAAGAAATACAAGGAAAGCTGCTTGAATA
CCTTTCAAGGCTTCAGCATGCCCCCAGTGTTCAGTTTCAAGAAAGACCTCCTGATACTGAACTCCCAGAGGCAGAAGAAGATCAAGAGGATAGGGATGAGAGATGGGATC
CAGACTCGGATATGGAAGTTGATGAAGAGAGAAAACCCATCCAAAGCAGAGTTAAAAGAGAGACAGTTGAATCTGAAATCAAAGATCCGGAAGTTAATCCGGAGAGTGCC
AGAGGTTCAGAAAAAGCAGCAGCCGAGACTACAAGCGCAAAGGCTTTAGATATAGGTTCTCTCAAAATCGAAGAGTCAGGCGTTAAACTCGAGGAGACCAGCAAGCACAA
TGACCAAATCTTCCCCTAG
Protein sequenceShow/hide protein sequence
KFGSWIFSLLSIVRQVLWPLLQQFSRLWRQGGIHYHLGLTVRGRSAISTTLRLGITIMGRVTQSRIASE*HMPFLPIMAYSSICRSSSLFLPETKSSADFMLMIMWRFLK
ALPLKRSKTSDSLSASMSVRTVLSLMASILFVRLMLVDLLVVPLS*TIRFVILLLIGLVGYTMRRNAKLLGFVMSMILFWRYWNSLNIMSVFYMLTLISTMEMVLKRLFI
QPTGSLYRSTSLEIIFLVQEIETLVMGKESTTPLMFLWMTELMMKAIISCSNL*WEKLWKFLNLVLLFSSVVLTLFLAIGDALTCQ*KVMQSVLDI*DHSMCLYYCLVGV
AILSVMLLAAGATRQELH*GWRLMIKCHNMNIMSILALITLCMLLPVIWRTKIHTKCKKYKESCLNTFQGFSMPPVFSFKKDLLILNSQRQKKIKRIGMRDGIQTRIWKL
MKRENPSKAELKERQLNLKSKIRKLIRRVPEVQKKQQPRLQAQRLI*VLSKSKSQALNSRRPASTMTKSSPX