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Chy11G193300 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G193300
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationchrH11:10284699..10285255
RNA-Seq ExpressionChy11G193300
SyntenyChy11G193300
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646817.1 hypothetical protein Csa_005087 [Cucumis sativus]5.07e-7568.31Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECLATLG  PHEFASA+AQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLI YSIVPKLTE+VDFHA+FGLDKQGLI KVL        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  --------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                            D+DLQAIA GYPE                  NCGFRDAQI ALVAGYPPILIKSI HSIEPQ+
Subjt:  --------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

XP_015944058.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X1 [Arachis duranensis]8.31e-5152.46Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPRLISYSI  KL E+VDF AS GL+K G+IGKV+        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                            ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+EP++
Subjt:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

XP_020968925.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis ipaensis]2.95e-5152.46Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPRLISYSI  KL E+VDF AS GL+K G+IGKV+        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                            ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+EP++
Subjt:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

XP_020988432.1 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X2 [Arachis duranensis]2.95e-5152.46Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPRLISYSI  KL E+VDF AS GL+K G+IGKV+        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                            ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+EP++
Subjt:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

XP_031744171.1 LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus]2.60e-7168.31Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECLATLG  PHEFASA+AQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLI YSIVPKLTE+VDFHA+FGLDKQGLI KVL        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  --------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                            D+DLQAIA GYPE                  NCGFRDAQI ALVAGYPPILIKSI HSIEPQ+
Subjt:  --------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

TrEMBL top hitse value%identityAlignment
A0A0A0KE07 Uncharacterized protein4.4e-5868.31Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECLATLG  PHEFASA+AQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLI YSIVPKLTE+VDFHA+FGLDKQGLI KVL        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  --------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                            D+DLQAIA GYPE                  NCGFRDAQI ALVAGYPPILIKSI HSIEPQ+
Subjt:  --------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

A0A445B8S2 Uncharacterized protein1.1e-4052.46Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPRLISYSI  KL E+VDF AS GL+K G+IGKV+        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                            ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+EP++
Subjt:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

A0A6P5MUG8 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X21.1e-4052.46Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPRLISYSI  KL E+VDF AS GL+K G+IGKV+        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                            ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+EP++
Subjt:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

A0A6P5MY98 transcription termination factor MTERF6, chloroplastic/mitochondrial isoform X11.1e-4052.46Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECL TLG +PHE  SAIA+FP++L HS+E+KLCP LAFFQAL IPEK LGK+ILLNPRLISYSI  KL E+VDF AS GL+K G+IGKV+        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                            ++DLQA+AV +P                  + CGF+D QIAALV G+PPILIKSI +S+EP++
Subjt:  --------------------DIDLQAIAVGYP------------------ENCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

A0A6P6AG45 transcription termination factor MTERF6, chloroplastic/mitochondrial1.8e-4051.91Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECLATLG + HE ASAIA+FP+++ HS+E+KLCP LAFFQAL +PEK LGKMILLNPRLISYSI  KLTE+VDF A+ GL ++G+IGK+L        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  --------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                            + DLQ +A+ +PE                   CGF D QI ALV GYPPILIKSI HS+EP++
Subjt:  --------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

SwissProt top hitse value%identityAlignment
F4IHL3 Transcription termination factor MTERF2, chloroplastic2.1e-0427.43Show/hide
Query:  PYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVLDID--LQAIAVG--------YPENCGFRDA
        P +    +E  + P++ F Q + IP + +G M++  P L++ S+  K+  VV F  +     Q  IGKV+ +D  L   ++G        Y  + G R  
Subjt:  PYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVLDID--LQAIAVG--------YPENCGFRDA

Query:  QIAALVAGYPPIL
        Q+  ++A +P +L
Subjt:  QIAALVAGYPPIL

F4JVI3 Transcription termination factor MTERF5, chloroplastic1.4e-0523.74Show/hide
Query:  LATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLI-------GKVLDIDLQ
        L TLG   +++A  I++FP +L +S + KL   + F     + E+ +G+++   P ++SYS+  KL   +++  S  +D   L+       G  ++ +L+
Subjt:  LATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLI-------GKVLDIDLQ

Query:  AIAVGYPENCGFRDAQIAALVAGYPPILIKSIAHSIEPQ
         +   + E  GF   +I  +++ Y  +   S+  ++ P+
Subjt:  AIAVGYPENCGFRDAQIAALVAGYPPILIKSIAHSIEPQ

Q9SZL6 Transcription termination factor MTERF6, chloroplastic/mitochondrial5.0e-3544.57Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECL++LG  P E ASAI +FP +L HS+E+KLCP LAFFQAL +PE  LGKMIL NPRLISYSI  KLT +V F AS GLD+ G+IGKVL        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  ---------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                             +  ++++ + +P+                   CGF D+QIA +V GYP ILIKS+ +S++P++
Subjt:  ---------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

Arabidopsis top hitse value%identityAlignment
AT2G21710.1 Mitochondrial transcription termination factor family protein1.5e-0527.43Show/hide
Query:  PYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVLDID--LQAIAVG--------YPENCGFRDA
        P +    +E  + P++ F Q + IP + +G M++  P L++ S+  K+  VV F  +     Q  IGKV+ +D  L   ++G        Y  + G R  
Subjt:  PYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVLDID--LQAIAVG--------YPENCGFRDA

Query:  QIAALVAGYPPIL
        Q+  ++A +P +L
Subjt:  QIAALVAGYPPIL

AT4G14605.1 Mitochondrial transcription termination factor family protein1.0e-0623.74Show/hide
Query:  LATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLI-------GKVLDIDLQ
        L TLG   +++A  I++FP +L +S + KL   + F     + E+ +G+++   P ++SYS+  KL   +++  S  +D   L+       G  ++ +L+
Subjt:  LATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLI-------GKVLDIDLQ

Query:  AIAVGYPENCGFRDAQIAALVAGYPPILIKSIAHSIEPQ
         +   + E  GF   +I  +++ Y  +   S+  ++ P+
Subjt:  AIAVGYPENCGFRDAQIAALVAGYPPILIKSIAHSIEPQ

AT4G38160.1 Mitochondrial transcription termination factor family protein3.6e-3644.57Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECL++LG  P E ASAI +FP +L HS+E+KLCP LAFFQAL +PE  LGKMIL NPRLISYSI  KLT +V F AS GLD+ G+IGKVL        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  ---------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                             +  ++++ + +P+                   CGF D+QIA +V GYP ILIKS+ +S++P++
Subjt:  ---------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

AT4G38160.2 Mitochondrial transcription termination factor family protein3.6e-3644.57Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECL++LG  P E ASAI +FP +L HS+E+KLCP LAFFQAL +PE  LGKMIL NPRLISYSI  KLT +V F AS GLD+ G+IGKVL        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  ---------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                             +  ++++ + +P+                   CGF D+QIA +V GYP ILIKS+ +S++P++
Subjt:  ---------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL

AT4G38160.3 Mitochondrial transcription termination factor family protein3.6e-3644.57Show/hide
Query:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------
        MVECL++LG  P E ASAI +FP +L HS+E+KLCP LAFFQAL +PE  LGKMIL NPRLISYSI  KLT +V F AS GLD+ G+IGKVL        
Subjt:  MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVL--------

Query:  ---------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL
                             +  ++++ + +P+                   CGF D+QIA +V GYP ILIKS+ +S++P++
Subjt:  ---------------------DIDLQAIAVGYPE------------------NCGFRDAQIAALVAGYPPILIKSIAHSIEPQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGAGTGCCTTGCCACTCTGGGTGGTCAGCCCCATGAATTTGCTTCGGCCATTGCCCAATTTCCTTACATGCTTTTTCATAGCATGGAGGACAAGCTTTGCCCACG
TTTGGCTTTTTTCCAAGCATTGGATATCCCTGAGAAGCTGCTTGGGAAGATGATTTTGCTCAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTACTGAGGTTG
TGGACTTTCATGCTAGTTTTGGCCTTGATAAGCAAGGGTTAATTGGCAAAGTTTTGGATATAGATCTTCAAGCAATTGCAGTTGGCTATCCTGAGAACTGCGGATTTCGA
GATGCGCAGATTGCAGCCCTGGTGGCCGGTTATCCTCCTATTTTGATTAAGAGCATTGCACATTCTATAGAACCTCAATTAATTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGAGTGCCTTGCCACTCTGGGTGGTCAGCCCCATGAATTTGCTTCGGCCATTGCCCAATTTCCTTACATGCTTTTTCATAGCATGGAGGACAAGCTTTGCCCACG
TTTGGCTTTTTTCCAAGCATTGGATATCCCTGAGAAGCTGCTTGGGAAGATGATTTTGCTCAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTACTGAGGTTG
TGGACTTTCATGCTAGTTTTGGCCTTGATAAGCAAGGGTTAATTGGCAAAGTTTTGGATATAGATCTTCAAGCAATTGCAGTTGGCTATCCTGAGAACTGCGGATTTCGA
GATGCGCAGATTGCAGCCCTGGTGGCCGGTTATCCTCCTATTTTGATTAAGAGCATTGCACATTCTATAGAACCTCAATTAATTTCTTGA
Protein sequenceShow/hide protein sequence
MVECLATLGGQPHEFASAIAQFPYMLFHSMEDKLCPRLAFFQALDIPEKLLGKMILLNPRLISYSIVPKLTEVVDFHASFGLDKQGLIGKVLDIDLQAIAVGYPENCGFR
DAQIAALVAGYPPILIKSIAHSIEPQLIS