; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy11G195440 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G195440
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
Genome locationchrH11:13617292..13618034
RNA-Seq ExpressionChy11G195440
SyntenyChy11G195440
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]3.44e-7767.38Show/hide
Query:  TRGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYE
         +GLLHKSFPYYDD  Y F  D AT AH +TFAD GSNV   FND V LGDSH+QDI  +YSQ V MS DE+ G  AG++ E RN SSGSKRKRG  HYE
Subjt:  TRGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYE

Query:  MV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED
        MV VIS+A +FGNDQLK I +WPKEKRAT+VEL  EVVKQLQDIP+L S+DR KLMQI+F  V+ I+GFLS PT+ KLEYC +LLE+
Subjt:  MV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]7.43e-8170.43Show/hide
Query:  RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEM
        + LLHKSFPYYDD FY F KD ATRA  +TFADVGSNV   FN DV L DSHDQDI MMYSQ V MSPDEM G  AG++ E +NCSSGSKRK+G  HYE 
Subjt:  RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEM

Query:  V*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED
        V VI +A++FGNDQLKAIANWPKEKRAT+VEL AEV+KQLQDIP+L S+DR KL+QI+F  V+ I+GFLS PTE KLEYC +LL++
Subjt:  V*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]4.50e-7767.91Show/hide
Query:  TRGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYE
         +GLL+KSFPYYDD  Y F KD AT A  +TFADVGSN+   FND V LGDSH +DI  MYSQ V MS DEM GT AG++ E RNCSS SKRK+G  HYE
Subjt:  TRGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYE

Query:  MV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED
         V VI +AMKFGNDQLKAIA+W KEKRA KVEL A VVKQLQDIPKL ++DR K++QI+F  V+ I+GFLS PTE KLEYC VLLE+
Subjt:  MV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]4.66e-7157.01Show/hide
Query:  IRGPSCSGFGWNEEYQCIIAELELFD--------TRGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVD
        +RGPSCSGFGWNEE+QCIIAE +LFD        T+GLLHKSFPYYDD  Y F KD AT A  +TF DVGSNV   FND + LGDSHD+DI  MYSQ V 
Subjt:  IRGPSCSGFGWNEEYQCIIAELELFD--------TRGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVD

Query:  MSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEMV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDI
        +SPDEM G  A                          VI + M+FGN+QLKAIA+W KEKRA ++E+ A+VVKQLQDIP+L S+ R KLMQI+F  ++ I
Subjt:  MSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEMV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDI

Query:  KGFLSCPTEHKLEYCRVLLED
         GFLS PTE KLEYC +LL++
Subjt:  KGFLSCPTEHKLEYCRVLLED

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.00e-9365.61Show/hide
Query:  IRGPSCSGFGWNEEYQCIIAELELFDT--------RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVD
        +RGPSCSGFGWNEE+QCIIAE +LFD+        +GLLHKSFPYYDD  Y F KD AT A  +TF +VGSNV   FND + LGDSHD+DI  MYSQ V 
Subjt:  IRGPSCSGFGWNEEYQCIIAELELFDT--------RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVD

Query:  MSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEMV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDI
        MSPDEM G  AG++ E RNCSS SKRKRG   YE V VI + M+FGN+QLKAIA+WPKEKRA +VE+ A+VVKQLQDIPKL S+DR KLMQI+F  ++ I
Subjt:  MSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEMV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDI

Query:  KGFLSCPTEHKLEYCRVLLED
        +GFLS PTE KLEYC +LL++
Subjt:  KGFLSCPTEHKLEYCRVLLED

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.3e-7465.61Show/hide
Query:  IRGPSCSGFGWNEEYQCIIAELELFDT--------RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVD
        +RGPSCSGFGWNEE+QCIIAE +LFD+        +GLLHKSFPYYDD  Y F KD AT A  +TF +VGSNV   FND + LGDSHD+DI  MYSQ V 
Subjt:  IRGPSCSGFGWNEEYQCIIAELELFDT--------RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVD

Query:  MSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEMV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDI
        MSPDEM G  AG++ E RNCSS SKRKRG   YE V VI + M+FGN+QLKAIA+WPKEKRA +VE+ A+VVKQLQDIPKL S+DR KLMQI+F  ++ I
Subjt:  MSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEMV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDI

Query:  KGFLSCPTEHKLEYCRVLLED
        +GFLS PTE KLEYC +LL++
Subjt:  KGFLSCPTEHKLEYCRVLLED

A0A5A7SQU2 Putative nuclease HARBI15.1e-6670.43Show/hide
Query:  RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEM
        + LLHKSFPYYDD FY F KD ATRA  +TFADVGSNV   FN DV L DSHDQDI MMYSQ V MSPDEM G  AG++ E +NCSSGSKRK+G  HYE 
Subjt:  RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEM

Query:  V*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED
        V VI +A++FGNDQLKAIANWPKEKRAT+VEL AEV+KQLQDIP+L S+DR KL+QI+F  V+ I+GFLS PTE KLEYC +LL++
Subjt:  V*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED

A0A5A7U0H7 Retrotransposon protein2.3e-7465.61Show/hide
Query:  IRGPSCSGFGWNEEYQCIIAELELFDT--------RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVD
        +RGPSCSGFGWNEE+QCIIAE +LFD+        +GLLHKSFPYYDD  Y F KD AT A  +TF +VGSNV   FND + LGDSHD+DI  MYSQ V 
Subjt:  IRGPSCSGFGWNEEYQCIIAELELFDT--------RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVD

Query:  MSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEMV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDI
        MSPDEM G  AG++ E RNCSS SKRKRG   YE V VI + M+FGN+QLKAIA+WPKEKRA +VE+ A+VVKQLQDIPKL S+DR KLMQI+F  ++ I
Subjt:  MSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEMV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDI

Query:  KGFLSCPTEHKLEYCRVLLED
        +GFLS PTE KLEYC +LL++
Subjt:  KGFLSCPTEHKLEYCRVLLED

A0A5D3BZU3 Retrotransposon protein8.4e-6167.74Show/hide
Query:  RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEM
        +GLLHKSFPYYDD  Y F  D AT AH +TFAD GSNV   FND V LGDSH+QDI  +YSQ V MS DE+ G  AG++ E RN SSGSKRKRG  HYEM
Subjt:  RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEM

Query:  V*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED
        V VIS+A +FGNDQLK I +WPKEKRAT+VEL  EVVKQLQDIP+L S+DR KLMQI+F  V+ I+GFLS PT+ KLEYC +LLE+
Subjt:  V*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED

A0A5D3CVB7 Retrotransposon protein4.2e-6068.28Show/hide
Query:  RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEM
        +GLL+KSFPYYDD  Y F KD AT A  +TFADVGSN+   FND V LGDSH +DI  MYSQ V MS DEM GT AG++ E RNCSS SKRK+G  HYE 
Subjt:  RGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGRNCSSGSKRKRGG*HYEM

Query:  V*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED
        V VI +AMKFGNDQLKAIA+W KEKRA KVEL A VVKQLQDIPKL ++DR K++QI+F  V+ I+GFLS PTE KLEYC VLLE+
Subjt:  V*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAAGGGGGCCATCGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGCATCATCGCAGAACTAGAGTTGTTTGATACCAGAGGTCTTCTACACAAATCATTTCCATA
TTATGATGATTCGTTCTATGCCTTCGACAAAGATTGGGCAACAAGAGCACATCCAAAGACCTTTGCTGATGTGGGATCTAATGTGCATTATAATTTTAATGACGATGTTT
TCCTTGGTGATTCACATGATCAAGACATCTCAATGATGTATAGCCAAGAAGTGGATATGTCACCAGATGAGATGTTAGGAACATGTGCAGGTCGATCAGATGAAGGAAGA
AATTGTTCAAGTGGAAGTAAGAGAAAACGAGGTGGCTAACATTATGAAATGGTATAGGTGATCAGTAATGCAATGAAATTTGGAAATGATCAATTAAAGGCAATTGCAAA
TTGGCCAAAAGAAAAGCGTGCAACAAAGGTCGAATTGGGTGCTGAAGTCGTGAAACAGCTGCAAGATATCCCTAAACTATGGAGCAAAGATAGGGTAAAGCTTATGCAAA
TCATATTCCTTAGGGTGGATGACATAAAGGGATTCTTATCGTGTCCAACAGAACATAAATTGGAGTATTGTAGGGTTCTCTTAGAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATAAGGGGGCCATCGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGCATCATCGCAGAACTAGAGTTGTTTGATACCAGAGGTCTTCTACACAAATCATTTCCATA
TTATGATGATTCGTTCTATGCCTTCGACAAAGATTGGGCAACAAGAGCACATCCAAAGACCTTTGCTGATGTGGGATCTAATGTGCATTATAATTTTAATGACGATGTTT
TCCTTGGTGATTCACATGATCAAGACATCTCAATGATGTATAGCCAAGAAGTGGATATGTCACCAGATGAGATGTTAGGAACATGTGCAGGTCGATCAGATGAAGGAAGA
AATTGTTCAAGTGGAAGTAAGAGAAAACGAGGTGGCTAACATTATGAAATGGTATAGGTGATCAGTAATGCAATGAAATTTGGAAATGATCAATTAAAGGCAATTGCAAA
TTGGCCAAAAGAAAAGCGTGCAACAAAGGTCGAATTGGGTGCTGAAGTCGTGAAACAGCTGCAAGATATCCCTAAACTATGGAGCAAAGATAGGGTAAAGCTTATGCAAA
TCATATTCCTTAGGGTGGATGACATAAAGGGATTCTTATCGTGTCCAACAGAACATAAATTGGAGTATTGTAGGGTTCTCTTAGAAGATAA
Protein sequenceShow/hide protein sequence
IRGPSCSGFGWNEEYQCIIAELELFDTRGLLHKSFPYYDDSFYAFDKDWATRAHPKTFADVGSNVHYNFNDDVFLGDSHDQDISMMYSQEVDMSPDEMLGTCAGRSDEGR
NCSSGSKRKRGGHYEMV*VISNAMKFGNDQLKAIANWPKEKRATKVELGAEVVKQLQDIPKLWSKDRVKLMQIIFLRVDDIKGFLSCPTEHKLEYCRVLLEDX