; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy11G195530 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G195530
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchrH11:13718281..13718942
RNA-Seq ExpressionChy11G195530
SyntenyChy11G195530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45805.1 hypothetical protein Csa_005190 [Cucumis sativus]2.98e-7974.12Show/hide
Query:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTFQRGCLTLDEHLKKFKHLCDKLATMKKPLDDVTKVFHL
        MGI+HHLTEEKKHDDEA NKEESSKDDPS  VWIT DGLLISWLL +ILEDV NMIE   TTFQ+G  TLDEHLKK KHLCDKLA MKKP DDV KVF L
Subjt:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTFQRGCLTLDEHLKKFKHLCDKLATMKKPLDDVTKVFHL

Query:  TRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQF
         RGLGSRYQGF   ML K    SFNQ VV +KAHDEMLS+EL+EE F  INHAQAFY + G  R   RQF
Subjt:  TRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQF

RVW19921.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]8.43e-3837.5Show/hide
Query:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE
        +G+ HHL+E +   +E +  E     D S   W  NDGLL SWLLG++ E+V+ +++   T +                            ++G  +LDE
Subjt:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE

Query:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS
        +L++FK +CD LA ++KP+ D+ KVF L +GLG++Y  F +AML K PY S+NQFV+AL+ H++M+  E  EE    INH QA++ + G GR    +F S
Subjt:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS

Query:  RGIGF-PQSKFQGNTS
        RG GF P  +F  N +
Subjt:  RGIGF-PQSKFQGNTS

RVW43526.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.14e-3737.5Show/hide
Query:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE
        +G+ HHL+E +    E +  E     D S   W  NDGLL SWLLG++ E+V+ +++   T +                            ++G  +LDE
Subjt:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE

Query:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS
        +L++FK +CD LA ++KP+ D+ KVF L +GLG++Y  F +AML K PY S+NQFV+AL+ H++M+  E  EE    INH QA++ + G GR    +F S
Subjt:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS

Query:  RGIGF-PQSKFQGNTS
        RG GF P  +F  N +
Subjt:  RGIGF-PQSKFQGNTS

RVX14187.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.00e-3737.5Show/hide
Query:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE
        +G+ HHL+E +   +E +  E     D S   W  NDGLL SWLLG++ E+V+ +++ I T +                            ++G  +LDE
Subjt:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE

Query:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS
        +L++FK +CD LAT++KP+ D+ KVF L +GLG++Y  F +AML K  Y S+NQFV+AL+ H++M+  E  EE    INH QA++ + G GR    +F  
Subjt:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS

Query:  RGIGF-PQSKFQGNTS
        RG GF P  +F  N +
Subjt:  RGIGF-PQSKFQGNTS

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]9.15e-5246.95Show/hide
Query:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIE----------------------------EI*TTFQRGCLTLDE
        +G++HHL EE    DE   KE  S        WI NDGLL SWLLG+I EDVL ++E                            E   T ++G L++DE
Subjt:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIE----------------------------EI*TTFQRGCLTLDE

Query:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS
        +++KFK+LCD+L  MKKPLDD+TKVFHL RGLG +Y+ F  AML K PY S+NQFV+ALKAHD+ L++E +EE    +N  QAF+   G  R   RQFSS
Subjt:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS

Query:  RGIGFPQSKFQGN
        RG GF  SK   N
Subjt:  RGIGFPQSKFQGN

TrEMBL top hitse value%identityAlignment
A0A0A0K7S3 Uncharacterized protein4.0e-6274.12Show/hide
Query:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTFQRGCLTLDEHLKKFKHLCDKLATMKKPLDDVTKVFHL
        MGI+HHLTEEKKHDDEA NKEESSKDDPS  VWIT DGLLISWLL +ILEDV NMIE   TTFQ+G  TLDEHLKK KHLCDKLA MKKP DDV KVF L
Subjt:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTFQRGCLTLDEHLKKFKHLCDKLATMKKPLDDVTKVFHL

Query:  TRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQF
         RGLGSRYQGF   ML K    SFNQ VV +KAHDEMLS+EL+EE F  INHAQAFY + G  R   RQF
Subjt:  TRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQF

A0A438C9J9 Retrovirus-related Pol polyprotein from transposon RE12.3e-3337.5Show/hide
Query:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE
        +G+ HHL+E +   +E +  E     D S   W  NDGLL SWLLG++ E+V+ +++   T +                            ++G  +LDE
Subjt:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE

Query:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS
        +L++FK +CD LA ++KP+ D+ KVF L +GLG++Y  F +AML K PY S+NQFV+AL+ H++M+  E  EE    INH QA++ + G GR    +F S
Subjt:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS

Query:  RGIGF-PQSKFQGNTS
        RG GF P  +F  N +
Subjt:  RGIGF-PQSKFQGNTS

A0A438E6Z5 Retrovirus-related Pol polyprotein from transposon TNT 1-945.1e-3337.5Show/hide
Query:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE
        +G+ HHL+E +    E +  E     D S   W  NDGLL SWLLG++ E+V+ +++   T +                            ++G  +LDE
Subjt:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE

Query:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS
        +L++FK +CD LA ++KP+ D+ KVF L +GLG++Y  F +AML K PY S+NQFV+AL+ H++M+  E  EE    INH QA++ + G GR    +F S
Subjt:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS

Query:  RGIGF-PQSKFQGNTS
        RG GF P  +F  N +
Subjt:  RGIGF-PQSKFQGNTS

A0A438JZ09 Retrovirus-related Pol polyprotein from transposon RE15.1e-3337.5Show/hide
Query:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE
        +G+ HHL+E +   +E +  E     D S   W  NDGLL SWLLG++ E+V+ +++ I T +                            ++G  +LDE
Subjt:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEI*TTF----------------------------QRGCLTLDE

Query:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS
        +L++FK +CD LAT++KP+ D+ KVF L +GLG++Y  F +AML K  Y S+NQFV+AL+ H++M+  E  EE    INH QA++ + G GR    +F  
Subjt:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS

Query:  RGIGF-PQSKFQGNTS
        RG GF P  +F  N +
Subjt:  RGIGF-PQSKFQGNTS

A0A6J1DMG5 uncharacterized protein LOC1110213794.6e-4246.95Show/hide
Query:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIE----------------------------EI*TTFQRGCLTLDE
        +G++HHL EE    DE   KE  S        WI NDGLL SWLLG+I EDVL ++E                            E   T ++G L++DE
Subjt:  MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIE----------------------------EI*TTFQRGCLTLDE

Query:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS
        +++KFK+LCD+L  MKKPLDD+TKVFHL RGLG +Y+ F  AML K PY S+NQFV+ALKAHD+ L++E +EE    +N  QAF+   G  R   RQFSS
Subjt:  HLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGFHIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSS

Query:  RGIGFPQSKFQGN
        RG GF  SK   N
Subjt:  RGIGFPQSKFQGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATTAAACACCATCTCACAGAAGAAAAGAAACATGATGATGAAGCTGTCAACAAGGAAGAAAGCTCCAAAGATGATCCTAGCCGTGCAGTTTGGATCACAAATGA
TGGGCTTCTTATCTCTTGGTTGCTGGGGGTAATCTTAGAAGATGTTTTGAACATGATAGAAGAAATATAGACGACATTCCAGAGGGGATGCTTAACTCTTGATGAACATT
TAAAAAAATTTAAACATCTCTGTGATAAACTAGCTACTATGAAGAAACCACTAGATGATGTTACTAAAGTGTTTCATCTTACTAGAGGCTTAGGATCTCGATACCAAGGT
TTTCACATAGCAATGTTACCAAAACACCCATATTCCTCTTTTAACCAATTTGTTGTGGCTCTTAAAGCACATGATGAAATGTTGTCTAATGAACTTAAAGAAGAAACTTT
TGGACCAATCAATCATGCTCAAGCTTTTTACAGAGAAATAGGTAGCGGTAGAAGATGTGTGAGACAATTCTCTTCTCGTGGAATAGGTTTCCCTCAAAGCAAATTCCAAG
GAAATACAAGCATCAGAATCAACCTTCA
mRNA sequenceShow/hide mRNA sequence
ATGGGCATTAAACACCATCTCACAGAAGAAAAGAAACATGATGATGAAGCTGTCAACAAGGAAGAAAGCTCCAAAGATGATCCTAGCCGTGCAGTTTGGATCACAAATGA
TGGGCTTCTTATCTCTTGGTTGCTGGGGGTAATCTTAGAAGATGTTTTGAACATGATAGAAGAAATATAGACGACATTCCAGAGGGGATGCTTAACTCTTGATGAACATT
TAAAAAAATTTAAACATCTCTGTGATAAACTAGCTACTATGAAGAAACCACTAGATGATGTTACTAAAGTGTTTCATCTTACTAGAGGCTTAGGATCTCGATACCAAGGT
TTTCACATAGCAATGTTACCAAAACACCCATATTCCTCTTTTAACCAATTTGTTGTGGCTCTTAAAGCACATGATGAAATGTTGTCTAATGAACTTAAAGAAGAAACTTT
TGGACCAATCAATCATGCTCAAGCTTTTTACAGAGAAATAGGTAGCGGTAGAAGATGTGTGAGACAATTCTCTTCTCGTGGAATAGGTTTCCCTCAAAGCAAATTCCAAG
GAAATACAAGCATCAGAATCAACCTTCA
Protein sequenceShow/hide protein sequence
MGIKHHLTEEKKHDDEAVNKEESSKDDPSRAVWITNDGLLISWLLGVILEDVLNMIEEITTFQRGCLTLDEHLKKFKHLCDKLATMKKPLDDVTKVFHLTRGLGSRYQGF
HIAMLPKHPYSSFNQFVVALKAHDEMLSNELKEETFGPINHAQAFYREIGSGRRCVRQFSSRGIGFPQSKFQGNTSIRINLX