CuGenDBv2

Gene ID	Chy11G196230
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	50S ribosomal protein L20
Genome location	chrH11:14892779..14896526
RNA-Seq Expression	Chy11G196230
Synteny	Chy11G196230
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139908.1 uncharacterized protein LOC101216644 [Cucumis sativus]

2.17e-81

99.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISCNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDAASMIV
Subjt:  ISCNAFPGNKNVVFPPKKDAASMIV

XP_008456292.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo]

4.39e-81

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISCNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDAASMIV
Subjt:  ISCNAFPGNKNVVFPPKKDAASMIV

XP_022943497.1 uncharacterized protein LOC111448251 [Cucurbita moschata]

1.79e-80

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISCNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDA SMIV
Subjt:  ISCNAFPGNKNVVFPPKKDAASMIV

XP_022985864.1 uncharacterized protein LOC111483787 [Cucurbita maxima]

2.54e-80

96.8

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISCNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDA SM+V
Subjt:  ISCNAFPGNKNVVFPPKKDAASMIV

XP_038901625.1 50S ribosomal protein L20 [Benincasa hispida]

5.12e-80

96.8

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKG+RGRAKNCIRIARERVEK LQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISCNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDAASMIV
Subjt:  ISCNAFPGNKNVVFPPKKDAASMIV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KD68 50S ribosomal protein L20

9.0e-63

99.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISCNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDAASMIV
Subjt:  ISCNAFPGNKNVVFPPKKDAASMIV

A0A1S4E159 50S ribosomal protein L20

1.5e-62

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISCNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDAASMIV
Subjt:  ISCNAFPGNKNVVFPPKKDAASMIV

A0A6J1D684 50S ribosomal protein L20

1.9e-60

95.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISCNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVV PPKKD  S++V
Subjt:  ISCNAFPGNKNVVFPPKKDAASMIV

A0A6J1FUI3 50S ribosomal protein L20

4.5e-62

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISCNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDA SMIV
Subjt:  ISCNAFPGNKNVVFPPKKDAASMIV

A0A6J1JCG1 50S ribosomal protein L20

5.9e-62

96.8

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISCNAFPGNKNVVFPPKKDAASMIV
        IS NAFPGNKNVVFPPKKDA SM+V
Subjt:  ISCNAFPGNKNVVFPPKKDAASMIV

SwissProt top hits

e value

%identity

Alignment

B3CLK2 50S ribosomal protein L20

5.3e-28

62.5

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        K+ KLAKG+RGRAKNC RIA +RVEKALQY+YRDRRN+KRD R LWI RINA  R HG+ YG FMHGL    V LNRK+L+E++++    F  L++
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

B6IPJ8 50S ribosomal protein L20

2.3e-31

66.67

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ Y  FMHGL +  ++++RKVLS+I+  EP SFKALV+
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Q11KK1 50S ribosomal protein L20

2.0e-27

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALV
        K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ YG F+ GL K  ++++RKVL+++++HEP +F ALV
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALV

Q2GHR2 50S ribosomal protein L20

7.0e-28

61.86

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDI
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   NV LNRKVL++++++    FK +VD+
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDI

Q3YSX0 50S ribosomal protein L20

1.8e-28

60.4

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISCN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   N+ LNRKVL++++++   +FK +VDI+  
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISCN

Query:  A
        A
Subjt:  A

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

4.4e-54

82.26

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R HGVNYGNF+HGLMKEN+QLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISCNAFPGNKNVVFPPKKDAASMI
        +S  +FPGNKNVV   +K   S I
Subjt:  ISCNAFPGNKNVVFPPKKDAASMI

ATCG00660.1 ribosomal protein L20

1.1e-09

38.04

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Query:  KMNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSEISM
        +  + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L++I++
Subjt:  KMNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSEISM

Sequences

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CDS sequence

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ATGGATCATTTTCTGATAATCGAAATGCTCTCCTTCAAATCAACAGACTACCGAAAATTTGCCACCAGTGGTAATTTGAATCTATTGGAAATAAGAGCCGCGCAAGGAAG
AAAGATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCAT
ACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGGGTGAATTATGGCAATTTTATGCATGGGCTG
ATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTATCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGTTGGTAGACATCTCTTGTAATGCATTTCCTGGAAA
CAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA

mRNA sequence

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Protein sequence

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MDHFLIIEMLSFKSTDYRKFATSGNLNLLEIRAAQGRKMNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL
MKENVQLNRKVLSEISMHEPYSFKALVDISCNAFPGNKNVVFPPKKDAASMIV

Chy11G196230 (gene) of Cucumber (hystrix) v1 genome