CuGenDBv2

Gene ID	Chy11G200000
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chrH11:20873651..20874227
RNA-Seq Expression	Chy11G200000
Synteny	Chy11G200000
Gene Ontology terms	GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR025558 - Domain of unknown function DUF4283

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042316.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa]

5.48e-61

56.08

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Query:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL
        + YTPP AIG+KIVV P EEVI QG+ VWENSLVG+LIDA L Y VI+RL+EKIWG++EMPTIT++EN LICFQF+   S++WILSRGPWHLGGK MLL 
Subjt:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL

Query:  KWIPG--------------------------------------KPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVN
        KW PG                                      KP++LD  TKE+ R+SYARVCVEL+  S MP  ITVNLRG +FIV+
Subjt:  KWIPG--------------------------------------KPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVN

KAA0062320.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa]

6.94e-63

58.95

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Query:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL
        + YT P AIG+KIVV PTEEVIDQG+ VWENSLVGQLIDAKL Y VI RL+EKI G++EMP IT++EN LICFQF+R  S++WILSRGPWHLGGK ML  
Subjt:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL

Query:  KWIPG--------------------------------------KPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV
        KW PG                                      KP+SLD ATKER RLSYARVCVEL   S MP+ ITVNLRG EF V+V
Subjt:  KWIPG--------------------------------------KPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV

TYK26656.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa]

8.06e-65

58.95

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Query:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL
        + YT P AIG+KIVV PTEEVIDQG+ VWENSLVGQLIDAKL Y VI RL+EKI G++EMP IT++EN LICFQF+R  S++WILSRGPWHLGGK ML  
Subjt:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL

Query:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV
        KW P                                      GKP+SLD ATKER RLSYARVCVEL   S MP+ ITVNLRG EF V+V
Subjt:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV

XP_008460524.1 PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo]

6.16e-64

58.95

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Query:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL
        + YT P AIG+KIVV PTEEVIDQG+ VWENSLVGQLIDAKL Y VI RL+EKI G++EMP IT++EN LICFQF+R  S++WILSRGPWHLGGK ML  
Subjt:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL

Query:  KWIPG--------------------------------------KPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV
        KW PG                                      KP+SLD ATKER RLSYARVCVEL   S MP+ ITVNLRG EF V+V
Subjt:  KWIPG--------------------------------------KPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV

XP_031745056.1 uncharacterized protein LOC116405235 [Cucumis sativus]

1.21e-63

62.22

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Query:  KIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLLKWIPG------
        KIVVTP EEVI QGV V ENSLV QL+DAKL Y VIYRLIEKIWGR+EMPTITLMENGLI FQFK   SI+WILS GPWHLGGK MLL KW PG      
Subjt:  KIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLLKWIPG------

Query:  --------------------------------KPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNVT
                                        KPLS+D ATKER  LSYAR+CVELNV S MPA +TVNL+G+EFIV VT
Subjt:  --------------------------------KPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNVT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CC83 uncharacterized protein LOC103499323

3.9e-52

58.95

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Query:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL
        + YT P AIG+KIVV PTEEVIDQG+ VWENSLVGQLIDAKL Y VI RL+EKI G++EMP IT++EN LICFQF+R  S++WILSRGPWHLGGK ML  
Subjt:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL

Query:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV
        KW P                                      GKP+SLD ATKER RLSYARVCVEL   S MP+ ITVNLRG EF V+V
Subjt:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV

A0A1S3CJ11 uncharacterized protein LOC103501395

7.4e-51

56.84

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Query:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL
        + YT P  IG+KIVVTP EEVIDQG+ VWENSLVGQLID+KL Y VI  L+EKIWG++EMP IT++EN LICFQF+R  S++WILSRGPWHL  K MLL 
Subjt:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL

Query:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV
        KW P                                      GKP+SLD ATKER RLSYARVCVEL   S MPA ITV+LRG +F V+V
Subjt:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV

A0A5A7V507 DUF4283 domain-containing protein

3.9e-52

58.95

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Query:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL
        + YT P AIG+KIVV PTEEVIDQG+ VWENSLVGQLIDAKL Y VI RL+EKI G++EMP IT++EN LICFQF+R  S++WILSRGPWHLGGK ML  
Subjt:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL

Query:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV
        KW P                                      GKP+SLD ATKER RLSYARVCVEL   S MP+ ITVNLRG EF V+V
Subjt:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV

A0A5D3D5X6 Reverse transcriptase domain-containing protein

7.4e-51

56.84

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Query:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL
        + YT P  IG+KIVVTP EEVIDQG+ VWENSLVGQLID+KL Y VI  L+EKIWG++EMP IT++EN LICFQF+R  S++WILSRGPWHL  K MLL 
Subjt:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL

Query:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV
        KW P                                      GKP+SLD ATKER RLSYARVCVEL   S MPA ITV+LRG +F V+V
Subjt:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV

A0A5D3DSG9 DUF4283 domain-containing protein

3.9e-52

58.95

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Query:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL
        + YT P AIG+KIVV PTEEVIDQG+ VWENSLVGQLIDAKL Y VI RL+EKI G++EMP IT++EN LICFQF+R  S++WILSRGPWHLGGK ML  
Subjt:  MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLL

Query:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV
        KW P                                      GKP+SLD ATKER RLSYARVCVEL   S MP+ ITVNLRG EF V+V
Subjt:  KWIP--------------------------------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01050.1 zinc ion binding;nucleic acid binding

2.2e-07

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Query:  PTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLLKW---
        P    E+ V+T  EEV++   G+W+  ++ +++ +++   V+ R + ++W    + T+  +       +F+        L+ GPW + G  +L+  W   
Subjt:  PTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLLKW---

Query:  -------------------IP----------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVN
                           IP                G+PL +D  T    +  +ARVC+E+N+   +   + +N
Subjt:  -------------------IP----------------GKPLSLDHATKERCRLSYARVCVELNVHSTMPANITVN

Sequences

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CDS sequence

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ATGGCTTACACACCTCCTACTGCCATAGGGGAGAAGATTGTGGTGACCCCTACTGAAGAAGTTATTGATCAAGGTGTCGGAGTGTGGGAGAATTCCCTAGTCGGACAACT
AATTGACGCAAAATTGTCGTATCCAGTCATTTATCGACTAATAGAGAAGATTTGGGGTAGAGTTGAAATGCCTACAATCACACTTATGGAGAATGGCCTCATCTGCTTCC
AATTTAAACGACCGAATTCGATAGATTGGATCTTGTCCCGTGGACCATGGCACCTTGGGGGAAAACGCATGCTCCTCCTAAAATGGATTCCAGGAAAACCTCTGTCCTTA
GATCATGCCACCAAAGAAAGGTGTCGGCTTTCTTATGCCCGTGTTTGTGTGGAATTGAATGTACACAGCACTATGCCTGCCAATATAACTGTTAATCTTAGAGGAAAGGA
GTTCATTGTGAATGTTACGTAA

mRNA sequence

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Protein sequence

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MAYTPPTAIGEKIVVTPTEEVIDQGVGVWENSLVGQLIDAKLSYPVIYRLIEKIWGRVEMPTITLMENGLICFQFKRPNSIDWILSRGPWHLGGKRMLLLKWIPGKPLSL
DHATKERCRLSYARVCVELNVHSTMPANITVNLRGKEFIVNVT

Chy11G200000 (gene) of Cucumber (hystrix) v1 genome