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Chy11G200050 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G200050
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchrH11:20966188..20966664
RNA-Seq ExpressionChy11G200050
SyntenyChy11G200050
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016020 - membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033540.1 outer envelope pore protein 24 [Cucumis melo var. makuwa]4.21e-0547.37Show/hide
Query:  IIHCPLKRT-EIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLL
        I+  P + T EIESV  LEP ASMQ                        ++GKPQRKG AS NSNKKLTREV+ LL
Subjt:  IIHCPLKRT-EIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLL

KGN47248.1 hypothetical protein Csa_016987 [Cucumis sativus]4.17e-5568.52Show/hide
Query:  MMKSTQF*TFLSPILATSSLKINLPHMKLIICG----ILDFFS*LPYSSTMKVPRKE-LEKRAFS**L*RKTPIIHCPLKRTEIESVIGLEPAASMQNPF
        MMKSTQF TFLSPILA SSLKINLPHMKL+I      +L         S+MK  R+E L+  A         PI       T+IESVI LEPAASMQNPF
Subjt:  MMKSTQF*TFLSPILATSSLKINLPHMKLIICG----ILDFFS*LPYSSTMKVPRKE-LEKRAFS**L*RKTPIIHCPLKRTEIESVIGLEPAASMQNPF

Query:  LLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKASN
        LLSKEVVATLLEYDLCI AVTRKGKPQRKGGASSNSN+KLTREV+ LLGSWERE QAAKA N
Subjt:  LLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKASN

KGN57811.1 hypothetical protein Csa_010865 [Cucumis sativus]1.00e-0846.43Show/hide
Query:  PLKRTEIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKAS
        P + TEIES+  LEP AS+QN F LSKEVV  LLEYDLCI+A                                EREAQAAKAS
Subjt:  PLKRTEIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKAS

TYJ95647.1 hypothetical protein E5676_scaffold104G00740 [Cucumis melo var. makuwa]2.47e-0640.59Show/hide
Query:  SSTMKVPRKELEKRAFS**L*RKTPIIHCPLKRT-EIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVL
        SST ++  + L+  A       +  I+  P + T EIESV  LEP ASMQ                        ++GKPQRKG AS NSNKKLTREV+ L
Subjt:  SSTMKVPRKELEKRAFS**L*RKTPIIHCPLKRT-EIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVL

Query:  L
        L
Subjt:  L

TYK01560.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.38e-2977.78Show/hide
Query:  KRTEIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKA
        +RT+IESV  LEP AS+QN  LLSKEVVA LLEYDLCIRAVTRKGK QRKGG+  +SNKKL +EV+ LLGSWEREAQAAKA
Subjt:  KRTEIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKA

TrEMBL top hitse value%identityAlignment
A0A0A0K5P3 Uncharacterized protein1.7e-1365.75Show/hide
Query:  KRTEIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWE
        K TEIES   LE  A++ N F LSKEVV   LEY+LCIR VTRKGK Q KG AS  S+KKLTREV+ LLG+WE
Subjt:  KRTEIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWE

A0A0A0KBR4 Uncharacterized protein7.3e-1765Show/hide
Query:  EIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKASN
        E+E +  +   +S++   L   EVVA LLEYDLCIR VTRKGKP RKGGASS SNKK TREV+ LLGSW+REAQA K SN
Subjt:  EIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKASN

A0A0A0KCH2 Uncharacterized protein2.9e-4268.52Show/hide
Query:  MMKSTQF*TFLSPILATSSLKINLPHMKLIICG----ILDFFS*LPYSSTMKVPRKE-LEKRAFS**L*RKTPIIHCPLKRTEIESVIGLEPAASMQNPF
        MMKSTQF TFLSPILA SSLKINLPHMKL+I      +L         S+MK  R+E L+  A         PI     + T+IESVI LEPAASMQNPF
Subjt:  MMKSTQF*TFLSPILATSSLKINLPHMKLIICG----ILDFFS*LPYSSTMKVPRKE-LEKRAFS**L*RKTPIIHCPLKRTEIESVIGLEPAASMQNPF

Query:  LLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKASN
        LLSKEVVATLLEYDLCI AVTRKGKPQRKGGASSNSN+KLTREV+ LLGSWERE QAAKA N
Subjt:  LLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKASN

A0A0A0L9C9 Uncharacterized protein8.6e-2681.25Show/hide
Query:  EIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKASN
        EIESV  LEPAAS+QNPF LSKEVVA LLEYDLCIRAVTRKGK  RKGGAS N+NKKLT+EV+ LLGSWEREAQA K +N
Subjt:  EIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKASN

A0A5D3BR42 LINE-1 retrotransposable element ORF2 protein2.8e-2477.78Show/hide
Query:  KRTEIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKA
        +RT+IESV  LEP AS+QN  LLSKEVVA LLEYDLCIRAVTRKGK QRKGG+  +SNKKL +EV+ LLGSWEREAQAAKA
Subjt:  KRTEIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCIRAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAATCGACCCAATTTTAGACGTTTCTATCTCCAATCCTGGCAACCTCATCTCTGAAAATAAATTTGCCCCATATGAAGTTGATAATTTGCGGCATCCTTGATTT
TTTTTCTTGACTTCCATACTCTTCCACGATGAAAGTTCCACGGAAAGAATTAGAGAAGAGGGCCTTCAGCTAATAGCTTTAGAGGAAAACACCGATCATCCATTGCCCAT
TGAAGAGAACTGAAATTGAAAGTGTAATAGGATTAGAACCAGCAGCCTCTATGCAGAATCCTTTTCTGTTGAGCAAGGAAGTGGTAGCGACTCTTCTCGAATATGATTTA
TGCATTCGGGCTGTGACTAGGAAAGGGAAACCGCAGAGAAAGGGTGGGGCCTCCTCAAATAGCAACAAGAAGCTCACTAGAGAAGTTGAAGTTTTGTTAGGTAGTTGGGA
AAGGGAGGCTCAAGCAGCAAAAGCTAGTAATTTATGG
mRNA sequenceShow/hide mRNA sequence
ATGATGAAATCGACCCAATTTTAGACGTTTCTATCTCCAATCCTGGCAACCTCATCTCTGAAAATAAATTTGCCCCATATGAAGTTGATAATTTGCGGCATCCTTGATTT
TTTTTCTTGACTTCCATACTCTTCCACGATGAAAGTTCCACGGAAAGAATTAGAGAAGAGGGCCTTCAGCTAATAGCTTTAGAGGAAAACACCGATCATCCATTGCCCAT
TGAAGAGAACTGAAATTGAAAGTGTAATAGGATTAGAACCAGCAGCCTCTATGCAGAATCCTTTTCTGTTGAGCAAGGAAGTGGTAGCGACTCTTCTCGAATATGATTTA
TGCATTCGGGCTGTGACTAGGAAAGGGAAACCGCAGAGAAAGGGTGGGGCCTCCTCAAATAGCAACAAGAAGCTCACTAGAGAAGTTGAAGTTTTGTTAGGTAGTTGGGA
AAGGGAGGCTCAAGCAGCAAAAGCTAGTAATTTATGG
Protein sequenceShow/hide protein sequence
MMKSTQFTFLSPILATSSLKINLPHMKLIICGILDFFS*LPYSSTMKVPRKELEKRAFS*L*RKTPIIHCPLKRTEIESVIGLEPAASMQNPFLLSKEVVATLLEYDLCI
RAVTRKGKPQRKGGASSNSNKKLTREVEVLLGSWEREAQAAKASNLW