CuGenDBv2

Gene ID	Chy11G200460
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	classical arabinogalactan protein 25
Genome location	chrH11:21409824..21411064
RNA-Seq Expression	Chy11G200460
Synteny	Chy11G200460
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR039346 - Classical arabinogalactan protein 25/26

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575045.1 hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia]

1.62e-44

84.78

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+GS IPTIPSNPSPPNPD+FEA GPDSSALSP GLPG
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG

XP_008458497.1 PREDICTED: classical arabinogalactan protein 25 [Cucumis melo]

2.72e-57

100

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG

XP_011656664.1 classical arabinogalactan protein 25 [Cucumis sativus]

2.72e-57

100

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG

XP_023006472.1 classical arabinogalactan protein 25-like [Cucurbita maxima]

6.69e-46

86.96

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
        MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATGS IPTIPSNPSPPNPD+FEA GPDSSALSPFGLPG
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG

XP_023547783.1 classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]

1.98e-45

85.87

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+GS IPTIPSNPSPPNPD+FEA GPDSSALSPFGLPG
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBF8 Uncharacterized protein

1.8e-42

100

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG

A0A1S3C8K2 classical arabinogalactan protein 25

1.8e-42

100

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG

A0A5A7SSC0 Classical arabinogalactan protein 25

1.8e-42

100

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG

A0A6J1H4T0 classical arabinogalactan protein 25-like

4.8e-32

83.7

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
        MASFWYC+AVIM  MASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPG
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG

A0A6J1KVY5 classical arabinogalactan protein 25-like

8.8e-34

86.96

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG
        MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATG SIPTIPSNPSPPNPD+FEA GPDSSALSPFGLPG
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPG

SwissProt top hits

e value

%identity

Alignment

Q6NN00 Classical arabinogalactan protein 25

5.5e-09

44.57

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Query:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGV
        +F + + ++++F    +    S+ +  P+ S  Q+LSPEIAPLLPS GD +PS  GS   TIPS+PSPP+PD  +   PD  A SPF  P V
Subjt:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGV

Arabidopsis top hits

e value

%identity

Alignment

AT5G18690.1 arabinogalactan protein 25

3.9e-10

44.57

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Query:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGV
        +F + + ++++F    +    S+ +  P+ S  Q+LSPEIAPLLPS GD +PS  GS   TIPS+PSPP+PD  +   PD  A SPF  P V
Subjt:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGV

Sequences

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CDS sequence

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ATGGCCTCCTTTTGGTATTGTTCAGCAGTCATTATGGTTTTCATGGCCTCACCATTGCTTGCTTTACCATCTGTACCCAATCCAAAACCCAGCTCGCCTTTTCAAGAACT
CTCCCCTGAAATTGCTCCATTATTGCCTTCTACTGGCGATAAGATTCCCTCTGCAACTGGTTCTTCTATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGATG
ACTTCGAAGCTCTTGGCCCCGATTCCTCTGCCCTTTCGCCATTTGGCCTCCCAGGTGTACTTGGTTGA

mRNA sequence

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Protein sequence

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MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGVLG

Chy11G200460 (gene) of Cucumber (hystrix) v1 genome