; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy11G200770 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G200770
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionpolyadenylation factor subunit 2-like
Genome locationchrH11:21658647..21658944
RNA-Seq ExpressionChy11G200770
SyntenyChy11G200770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575060.1 hypothetical protein SDJN03_25699, partial [Cucurbita argyrosperma subsp. sororia]2.42e-0964.15Show/hide
Query:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALPP-GYRPTPNA-STKKKKSG
        +P PYN GPYAP  QAYGYPH+P PP AY Y  PP GY P  NA +T KKK G
Subjt:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALPP-GYRPTPNA-STKKKKSG
XP_022959345.1 protein SRC2-like [Cucurbita moschata]3.18e-1064.81Show/hide
Query:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALPP-GYRPTPNA-STKKKKSGM
        +P PYN GPYAP  QAYGYPH+P PP AY Y  PP GY P  NA +T KKK GM
Subjt:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALPP-GYRPTPNA-STKKKKSGM
XP_023006250.1 polyadenylation factor subunit 2-like [Cucurbita maxima]4.75e-0964.15Show/hide
Query:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALP-PGYRPTPNA-STKKKKSG
        +P PYN GPYAP  QAYGYPH+P PP AY Y  P PGY P  NA +T KKK G
Subjt:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALP-PGYRPTPNA-STKKKKSG
XP_023548312.1 formin-like protein 20 [Cucurbita pepo subsp. pepo]4.68e-0964.15Show/hide
Query:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALPP-GYRPTPNA-STKKKKSG
        +P PYN GPYAP  QAYGYPH+P PP AY Y  PP GY P  NA +T KKK G
Subjt:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALPP-GYRPTPNA-STKKKKSG
XP_038875072.1 formin-like protein 20 [Benincasa hispida]7.66e-2078.85Show/hide
Query:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALPPGYRPTPNASTKKKKSGM
        FP PYNIGPY PPPQ YGYPH+P PP AYGYA PPG RP  NA TKKKKSGM
Subjt:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALPPGYRPTPNASTKKKKSGM
TrEMBL top hitse value%identityAlignment
A0A6J1H610 protein SRC2-like9.5e-0764.81Show/hide
Query:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYA-LPPGYRPTPNA-STKKKKSGM
        +P PYN GPYA  PQAYGYPH+P PP AY Y   PPGY P  NA +T KKK GM
Subjt:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYA-LPPGYRPTPNA-STKKKKSGM
A0A6J1KZM6 polyadenylation factor subunit 2-like8.1e-0664.15Show/hide
Query:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALP-PGYRPTPNA-STKKKKSG
        +P PYN GPYA  PQAYGYPH+P PP AY Y  P PGY P  NA +T KKK G
Subjt:  FPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALP-PGYRPTPNA-STKKKKSG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTTCATCAACGTCGTTGCAATGAAAAGCCGTCCAACCCCACCCGAGCAACTGCATATCCACCGGAAAGTATATTCTCCGCCACCACATTACCGCATCGGAACCCACCAG
CTAAATACGCTCCTCCGTCGCCACCACCACGTTTCCACTACCATATAACATTGGGCCCTACGCTCCTCCTCCACAAGCCTACGGTTATCCACATTATCCTCTGCCACCGA
CGGCTTACGGTTATGCTCTGCCGCCAGGATACCGACCAACACCAAATGCTTCGACAAAGAAAAAGAAGTCGGGGATGA
mRNA sequenceShow/hide mRNA sequence
TCTTCATCAACGTCGTTGCAATGAAAAGCCGTCCAACCCCACCCGAGCAACTGCATATCCACCGGAAAGTATATTCTCCGCCACCACATTACCGCATCGGAACCCACCAG
CTAAATACGCTCCTCCGTCGCCACCACCACGTTTCCACTACCATATAACATTGGGCCCTACGCTCCTCCTCCACAAGCCTACGGTTATCCACATTATCCTCTGCCACCGA
CGGCTTACGGTTATGCTCTGCCGCCAGGATACCGACCAACACCAAATGCTTCGACAAAGAAAAAGAAGTCGGGGATGA
Protein sequenceShow/hide protein sequence
SSSTSLQKAVQPHPSNCISTGKYILRHHITASEPTS*IRSSVATTTFPLPYNIGPYAPPPQAYGYPHYPLPPTAYGYALPPGYRPTPNASTKKKKSGMX