; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy11G201640 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G201640
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionflowering time control protein FCA-like
Genome locationchrH11:22411084..22414318
RNA-Seq ExpressionChy11G201640
SyntenyChy11G201640
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575135.1 Flowering time control protein FCA, partial [Cucurbita argyrosperma subsp. sororia]6.30e-3980.95Show/hide
Query:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP
        +NH D+R S +NFRGGV+G NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFGS FQPPPV GQKRGYPFAGRGSSP
Subjt:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP

KAG6594021.1 Flowering time control protein FCA, partial [Cucurbita argyrosperma subsp. sororia]4.22e-5679.84Show/hide
Query:  LGIRLLTSAKLDRHRGDRYGPDQDSHPFRHSAAPSRFSDAPVNHHDTRRSPSNFRGGVAGA---NRRPFDSPPRYSTPP-AAGFRPMGTAGGFRPIPGPG
        LG   LTSAKLDRHRGDRYGPDQDSHP RHSAAPSRFSD+PVNHHD+RRSP+ F G V G    +RRPFDSPPRYST   AA FRPMGTAGGFRPIPG G
Subjt:  LGIRLLTSAKLDRHRGDRYGPDQDSHPFRHSAAPSRFSDAPVNHHDTRRSPSNFRGGVAGA---NRRPFDSPPRYSTPP-AAGFRPMGTAGGFRPIPGPG

Query:  DGGFGSGFQPPPVVGQKRGYPFAGRGSSP
         GGFGS FQPPPV GQKRGY F+GRGSSP
Subjt:  DGGFGSGFQPPPVVGQKRGYPFAGRGSSP

XP_023000619.1 flowering time control protein FCA-like [Cucurbita maxima]1.42e-5478.12Show/hide
Query:  LGIRLLTSAKLDRHRGDRYGPDQDSHPFRHSAAPSRFSDAPVNHHDTRRSPSNFRGGVAGA--NRRPFDSPPRYSTPP-AAGFRPMGTAGGFRPIPGPGD
        LG R LTSAKLDRHRGDRYGPDQDSHP+RHSAAPSRFSD+PVNHH +RRSP+ F G V G   +RRPFDSPP YSTP  AA FRP+GT  GFRPIPG G 
Subjt:  LGIRLLTSAKLDRHRGDRYGPDQDSHPFRHSAAPSRFSDAPVNHHDTRRSPSNFRGGVAGA--NRRPFDSPPRYSTPP-AAGFRPMGTAGGFRPIPGPGD

Query:  GGFGSGFQPPPVVGQKRGYPFAGRGSSP
        GGFGS FQPPPV GQKRGYPF+G GSSP
Subjt:  GGFGSGFQPPPVVGQKRGYPFAGRGSSP

XP_023548233.1 flowering time control protein FCA-like isoform X2 [Cucurbita pepo subsp. pepo]1.68e-3683.33Show/hide
Query:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP
        +NH D+R SP+NFRGGVAG NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFGS FQPPPV GQKRGYPFAGRGSSP
Subjt:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP

XP_023548234.1 flowering time control protein FCA-like isoform X3 [Cucurbita pepo subsp. pepo]1.58e-3683.33Show/hide
Query:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP
        +NH D+R SP+NFRGGVAG NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFGS FQPPPV GQKRGYPFAGRGSSP
Subjt:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP

TrEMBL top hitse value%identityAlignment
A0A6J1H3Q0 flowering time control protein FCA-like isoform X25.1e-3082.14Show/hide
Query:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP
        +NH D+R SP+NFRGGV+G NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFGS FQPPPV GQKRGYPFAGRGSSP
Subjt:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP

A0A6J1H400 flowering time control protein FCA-like isoform X15.1e-3082.14Show/hide
Query:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP
        +NH D+R SP+NFRGGV+G NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFGS FQPPPV GQKRGYPFAGRGSSP
Subjt:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP

A0A6J1H531 flowering time control protein FCA-like isoform X35.1e-3082.14Show/hide
Query:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP
        +NH D+R SP+NFRGGV+G NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFGS FQPPPV GQKRGYPFAGRGSSP
Subjt:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP

A0A6J1H743 flowering time control protein FCA-like isoform X45.1e-3082.14Show/hide
Query:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP
        +NH D+R SP+NFRGGV+G NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFGS FQPPPV GQKRGYPFAGRGSSP
Subjt:  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSP

A0A6J1KKH9 flowering time control protein FCA-like8.7e-4678.12Show/hide
Query:  LGIRLLTSAKLDRHRGDRYGPDQDSHPFRHSAAPSRFSDAPVNHHDTRRSPSNFRGGV--AGANRRPFDSPPRYSTP-PAAGFRPMGTAGGFRPIPGPGD
        LG R LTSAKLDRHRGDRYGPDQDSHP+RHSAAPSRFSD+PVNHH +RRSP+ F G V   G +RRPFDSPP YSTP  AA FRP+GT  GFRPIPG G 
Subjt:  LGIRLLTSAKLDRHRGDRYGPDQDSHPFRHSAAPSRFSDAPVNHHDTRRSPSNFRGGV--AGANRRPFDSPPRYSTP-PAAGFRPMGTAGGFRPIPGPGD

Query:  GGFGSGFQPPPVVGQKRGYPFAGRGSSP
        GGFGS FQPPPV GQKRGYPF+G GSSP
Subjt:  GGFGSGFQPPPVVGQKRGYPFAGRGSSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCGGCGGCACGGAGGGGGAGACGTTGGCGGTGACTTTACAAATTTTGGGTATTCGTCTTCTCACTTCCGCAAAGCTGGATAGGCACAGAGGAGACCGCTATGGCCC
CGACCAAGATTCCCACCCCTTTCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACGCCCCTGTGAACCACCACGACACTCGACGGAGTCCCAGCAACTTCCGTGGTGGCG
TTGCTGGAGCTAACCGTCGCCCTTTCGACAGCCCTCCTCGATACTCTACTCCCCCTGCTGCTGGGTTTCGCCCGATGGGAACTGCCGGGGGATTCCGTCCAATTCCTGGT
CCTGGGGATGGTGGCTTTGGGTCCGGTTTCCAGCCGCCACCTGTTGTTGGACAGAAACGGGGTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCGGCGGCACGGAGGGGGAGACGTTGGCGGTGACTTTACAAATTTTGGGTATTCGTCTTCTCACTTCCGCAAAGCTGGATAGGCACAGAGGAGACCGCTATGGCCC
CGACCAAGATTCCCACCCCTTTCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACGCCCCTGTGAACCACCACGACACTCGACGGAGTCCCAGCAACTTCCGTGGTGGCG
TTGCTGGAGCTAACCGTCGCCCTTTCGACAGCCCTCCTCGATACTCTACTCCCCCTGCTGCTGGGTTTCGCCCGATGGGAACTGCCGGGGGATTCCGTCCAATTCCTGGT
CCTGGGGATGGTGGCTTTGGGTCCGGTTTCCAGCCGCCACCTGTTGTTGGACAGAAACGGGGTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAG
Protein sequenceShow/hide protein sequence
MCGGTEGETLAVTLQILGIRLLTSAKLDRHRGDRYGPDQDSHPFRHSAAPSRFSDAPVNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPG
PGDGGFGSGFQPPPVVGQKRGYPFAGRGSSPX