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Chy11G201740 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G201740
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchrH11:22480623..22481057
RNA-Seq ExpressionChy11G201740
SyntenyChy11G201740
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039528.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.89e-5572.41Show/hide
Query:  MDAYGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFE
        +DAYG+VLGT G+VRA GVCK+VNLTIANLSITHDFLPLPL SADVILGVTWLE LGKVIF YKLSEMEF LGEW+                        
Subjt:  MDAYGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFE

Query:  KEDQGVLIELSTVEQWGVGEARELIADYLSKLQPEIQKVLQSFSV
         EDQGVLIELSTVEQWG GEARE +ADYLSKLQ EIQKVLQSFSV
Subjt:  KEDQGVLIELSTVEQWGVGEARELIADYLSKLQPEIQKVLQSFSV

XP_022897563.1 uncharacterized protein LOC111411244 [Olea europaea var. sylvestris]7.95e-2645.61Show/hide
Query:  YGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEKED
        YGV++GTG  V+  GVCK V L++ N+ +  DFLPL L S DVILG+ WL TLG+    +++  M+F +G   + L+GD SL ++ V+LK M + F++E 
Subjt:  YGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEKED

Query:  QGVLIELSTVEQWG
        +GVL+EL  +E  G
Subjt:  QGVLIELSTVEQWG

XP_031737572.1 uncharacterized protein LOC116402461 [Cucumis sativus]3.34e-8293.1Show/hide
Query:  MDAYGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFE
        MDAYGVVLGTGGVVRATGVCKDVNL IANLSITH+FLPLPL S DVILGVTWLETLGKVIFDYKLSEMEFS GEWVVILQGDRSLVRSQVSLK M KTFE
Subjt:  MDAYGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFE

Query:  KEDQGVLIELSTVEQWGVGEARELIADYLSKLQPEIQKVLQSFSV
        KEDQGVLIELSTVEQWG GEARE IA+YLSKLQPEIQKVLQSFSV
Subjt:  KEDQGVLIELSTVEQWGVGEARELIADYLSKLQPEIQKVLQSFSV

XP_034697296.1 uncharacterized protein K02A2.6-like [Vitis riparia]3.94e-2542.75Show/hide
Query:  DAYGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEK
        + YGV +GTG VVR  G+C+ V L +  + +  +FLPL L SADVILG+ WLETLG    ++K   M+F LG   V L+GD SL ++ VSLK M +T + 
Subjt:  DAYGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEK

Query:  EDQGVLIELSTVEQWGVGEARELIADYLSKLQPEIQKV
        E  G+L+EL+ +E  G+GE +  +  +L ++  +  +V
Subjt:  EDQGVLIELSTVEQWGVGEARELIADYLSKLQPEIQKV

XP_038904464.1 uncharacterized protein LOC120090832 [Benincasa hispida]2.98e-3047.79Show/hide
Query:  AYGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEKE
        +YG++LG G  VR TGVCK V L ++NL+I +D  PLPL + DV+LGV WL TLG+V  D+  SEMEF +G+W V L+G+R+L+++Q+SLK M K   +E
Subjt:  AYGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEKE

Query:  DQGVLIELSTV-----EQWGVGEARELIADYLSKLQ
         QG+L+ELS++     E  G  + +E++  Y S  Q
Subjt:  DQGVLIELSTV-----EQWGVGEARELIADYLSKLQ

TrEMBL top hitse value%identityAlignment
A0A5A7T606 Gypsy/ty3 element polyprotein5.4e-1938.73Show/hide
Query:  YGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEKED
        YGV++G+G  V+  G+CK + + +  +SI  DFLPL L + D++LG+ WL+  G +  D+K   M F +G+  VIL+GD SL R ++SLK++ KT++ +D
Subjt:  YGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEKED

Query:  QGVLIELSTVEQWGVGEA-REL-IADYLSKLQPEIQKVLQSF
        QG L+    +   G+ +A REL + D + + Q E  ++ Q F
Subjt:  QGVLIELSTVEQWGVGEA-REL-IADYLSKLQPEIQKVLQSF

A0A5D3BD16 Ty3/gypsy retrotransposon protein5.4e-1938.73Show/hide
Query:  YGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEKED
        YGV++G+G  V+  G+CK + + +  +SI  DFLPL L + D++LG+ WL+  G +  D+K   M F +G+  VIL+GD SL R ++SLK++ KT++ +D
Subjt:  YGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEKED

Query:  QGVLIELSTVEQWGVGEA-REL-IADYLSKLQPEIQKVLQSF
        QG L+    +   G+ +A REL + D + + Q E  ++ Q F
Subjt:  QGVLIELSTVEQWGVGEA-REL-IADYLSKLQPEIQKVLQSF

A0A5D3CEX8 Ty3/gypsy retrotransposon protein5.4e-1938.73Show/hide
Query:  YGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEKED
        YGV++G+G  V+  G+CK + + +  +SI  DFLPL L + D++LG+ WL+  G +  D+K   M F +G+  VIL+GD SL R ++SLK++ KT++ +D
Subjt:  YGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEKED

Query:  QGVLIELSTVEQWGVGEA-REL-IADYLSKLQPEIQKVLQSF
        QG L+    +   G+ +A REL + D + + Q E  ++ Q F
Subjt:  QGVLIELSTVEQWGVGEA-REL-IADYLSKLQPEIQKVLQSF

A0A5D3CTU6 Ty3-gypsy retrotransposon protein1.0e-4672.41Show/hide
Query:  MDAYGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFE
        +DAYG+VLGT G+VRA GVCK+VNLTIANLSITHDFLPLPL SADVILGVTWLE LGKVIF YKLSEMEF LGEW+                        
Subjt:  MDAYGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFE

Query:  KEDQGVLIELSTVEQWGVGEARELIADYLSKLQPEIQKVLQSFSV
         EDQGVLIELSTVEQWG GEARE +ADYLSKLQ EIQKVLQSFSV
Subjt:  KEDQGVLIELSTVEQWGVGEARELIADYLSKLQPEIQKVLQSFSV

J3SDF5 Ty3/gypsy retrotransposon protein1.7e-2045.39Show/hide
Query:  DAYGVVLGTGGVVRATGVCKDVNLTI-ANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFE
        + +GV LG G  VR TG+C+ V L +   L +  DFLPL L ++DVILGV WLETLG V+ ++K  +M F LG     L GD +L RS+VSLK M +T  
Subjt:  DAYGVVLGTGGVVRATGVCKDVNLTI-ANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFE

Query:  KEDQGVLIELSTVEQWGVGEARELIADYLSKLQPEIQKVLQ
        KE  G+ +E + VE  G G  R+      SK++ EI   LQ
Subjt:  KEDQGVLIELSTVEQWGVGEARELIADYLSKLQPEIQKVLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCATATGGGGTTGTTCTGGGAACCGGAGGCGTAGTCCGAGCAACCGGTGTGTGTAAGGATGTAAACCTGACAATTGCCAATTTATCAATCACTCACGATTTTCT
CCCTCTACCACTCGAGAGTGCTGACGTTATATTAGGAGTTACTTGGTTGGAAACGTTAGGGAAAGTAATTTTTGATTACAAGTTGTCGGAGATGGAATTCTCACTGGGGG
AATGGGTGGTAATTCTTCAAGGGGATAGAAGTTTAGTAAGATCCCAAGTGTCACTGAAATTGATGAAGAAAACCTTTGAGAAGGAAGATCAAGGCGTGTTAATCGAATTA
AGTACAGTTGAACAGTGGGGAGTGGGCGAAGCAAGGGAACTCATAGCAGACTACTTGAGTAAACTACAACCAGAAATTCAAAAAGTTCTTCAGTCCTTTAGCGTT
mRNA sequenceShow/hide mRNA sequence
ATGGATGCATATGGGGTTGTTCTGGGAACCGGAGGCGTAGTCCGAGCAACCGGTGTGTGTAAGGATGTAAACCTGACAATTGCCAATTTATCAATCACTCACGATTTTCT
CCCTCTACCACTCGAGAGTGCTGACGTTATATTAGGAGTTACTTGGTTGGAAACGTTAGGGAAAGTAATTTTTGATTACAAGTTGTCGGAGATGGAATTCTCACTGGGGG
AATGGGTGGTAATTCTTCAAGGGGATAGAAGTTTAGTAAGATCCCAAGTGTCACTGAAATTGATGAAGAAAACCTTTGAGAAGGAAGATCAAGGCGTGTTAATCGAATTA
AGTACAGTTGAACAGTGGGGAGTGGGCGAAGCAAGGGAACTCATAGCAGACTACTTGAGTAAACTACAACCAGAAATTCAAAAAGTTCTTCAGTCCTTTAGCGTT
Protein sequenceShow/hide protein sequence
MDAYGVVLGTGGVVRATGVCKDVNLTIANLSITHDFLPLPLESADVILGVTWLETLGKVIFDYKLSEMEFSLGEWVVILQGDRSLVRSQVSLKLMKKTFEKEDQGVLIEL
STVEQWGVGEARELIADYLSKLQPEIQKVLQSFSV