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Chy11G201780 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G201780
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description30S ribosomal protein S1, chloroplastic
Genome locationchrH11:22553784..22554194
RNA-Seq ExpressionChy11G201780
SyntenyChy11G201780
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45607.1 hypothetical protein Csa_005067 [Cucumis sativus]5.75e-2373.53Show/hide
Query:  MILTAEDKIHKPKLVFEKA------------DEMVEMFRQRIAQAMARAGGLLRFHPKVLISYLFVMD
        MILT EDKIHKPKLVFEK             DEMVEMFRQRIAQAMA AGGLL FHPK+LISYLFVM+
Subjt:  MILTAEDKIHKPKLVFEKA------------DEMVEMFRQRIAQAMARAGGLLRFHPKVLISYLFVMD

RWR76397.1 Ribosomal protein S1 [Cinnamomum micranthum f. kanehirae]2.56e-0866Show/hide
Query:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLISY
        T  D I  PKLVFEKADEM ++FRQRIAQA  MARA  +LRF P+V I+Y
Subjt:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLISY

RZB55052.1 30S ribosomal protein S1, chloroplastic isoform B [Glycine soja]2.55e-0861.82Show/hide
Query:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLISYLFVMD
        T  D I  PKLVFEKA+EM + FRQRIAQA  MARA  +LRF P+V I  LFV +
Subjt:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLISYLFVMD

XP_022958818.1 30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita moschata]5.85e-0765.22Show/hide
Query:  DKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLIS
        D +H PKLVFEKADEM + FRQRIAQA  MARA  LL F P++L++
Subjt:  DKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLIS

XP_023006590.1 30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita maxima]5.85e-0765.22Show/hide
Query:  DKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLIS
        D +H PKLVFEKADEM + FRQRIAQA  MARA  LL F P++L++
Subjt:  DKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLIS

TrEMBL top hitse value%identityAlignment
A0A0A0KB49 Uncharacterized protein1.2e-1573.53Show/hide
Query:  MILTAEDKIHKPKLVFEKA------------DEMVEMFRQRIAQAMARAGGLLRFHPKVLISYLFVMD
        MILT EDKIHKPKLVFEK             DEMVEMFRQRIAQAMA AGGLL FHPK+LISYLFVM+
Subjt:  MILTAEDKIHKPKLVFEKA------------DEMVEMFRQRIAQAMARAGGLLRFHPKVLISYLFVMD

A0A3S3PZD1 Ribosomal protein S11.1e-0563.27Show/hide
Query:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLISY
        T  D I  PKLVFEKADEM ++FRQRIAQA A A   +LRF P+V I+Y
Subjt:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLISY

A0A445G1E6 30S ribosomal protein S1, chloroplastic isoform B1.1e-0559.26Show/hide
Query:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLISYLFVMD
        T  D I  PKLVFEKA+EM + FRQRIAQA A A   +LRF P+V I  LFV +
Subjt:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLISYLFVMD

A0A6J1H453 30S ribosomal protein S1, chloroplastic-like isoform X11.6e-0462.22Show/hide
Query:  DKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLIS
        D +H PKLVFEKADEM + FRQRIAQA A A   LL F P++L++
Subjt:  DKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLIS

A0A6J1L0J3 30S ribosomal protein S1, chloroplastic-like isoform X11.6e-0462.22Show/hide
Query:  DKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLIS
        D +H PKLVFEKADEM + FRQRIAQA A A   LL F P++L++
Subjt:  DKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLIS

SwissProt top hitse value%identityAlignment
P29344 30S ribosomal protein S1, chloroplastic8.0e-0661.36Show/hide
Query:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPK
        T  D I  PKLVFEKA+EM + FRQRIAQA A A   +LRF P+
Subjt:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPK

Q93VC7 30S ribosomal protein S1, chloroplastic8.0e-0661.36Show/hide
Query:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPK
        T  D I  PKLVFEKA+EM + FRQRIAQA A A   +LRF P+
Subjt:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPK

Arabidopsis top hitse value%identityAlignment
AT5G30510.1 ribosomal protein S15.7e-0761.36Show/hide
Query:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPK
        T  D I  PKLVFEKA+EM + FRQRIAQA A A   +LRF P+
Subjt:  TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACTTACTGCTGAAGACAAGATTCACAAACCAAAGCTTGTTTTTGAGAAGGCAGACGAGATGGTTGAGATGTTCAGGCAAAGAATAGCTCAAGCAATGGCTCGTGC
AGGCGGCCTACTCCGATTTCACCCGAAGGTACTTATTAGTTATTTGTTTGTCATGGATTTTTCAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATACTTACTGCTGAAGACAAGATTCACAAACCAAAGCTTGTTTTTGAGAAGGCAGACGAGATGGTTGAGATGTTCAGGCAAAGAATAGCTCAAGCAATGGCTCGTGC
AGGCGGCCTACTCCGATTTCACCCGAAGGTACTTATTAGTTATTTGTTTGTCATGGATTTTTCAGCTTAG
Protein sequenceShow/hide protein sequence
MILTAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARAGGLLRFHPKVLISYLFVMDFSA