; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy11G201950 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G201950
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptiontRNA pseudouridine synthase
Genome locationchrH11:22707066..22708053
RNA-Seq ExpressionChy11G201950
SyntenyChy11G201950
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0008033 - tRNA processing (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0106029 - tRNA pseudouridine synthase activity (molecular function)
InterPro domainsIPR020094 - Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
IPR020103 - Pseudouridine synthase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02989.1 protein TRIGALACTOSYLDIACYLGLYCEROL 4 [Cucumis melo var. makuwa]2.07e-3763.77Show/hide
Query:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLF-SFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPT
        MRCWAVGSPVLPPISLP SPIIPSPNGASSSSSRGFP       I++  F SF W                     L +A +G   +       QRSPPT
Subjt:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLF-SFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPT

Query:  IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
Subjt:  IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV

XP_004138518.2 uncharacterized protein LOC101205797 [Cucumis sativus]2.12e-3963.5Show/hide
Query:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLFSFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTI
        MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFP                     D +  +    P     LL +A +G   +       QRSPPTI
Subjt:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLFSFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTI

Query:  QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
Subjt:  QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV

XP_008458279.1 PREDICTED: tRNA pseudouridine synthase A 1 isoform X1 [Cucumis melo]1.34e-3963.77Show/hide
Query:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLF-SFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPT
        MRCWAVGSPVLPPISLP SPIIPSPNGASSSSSRGFP       I++  F SF W                     L +A +G   +       QRSPPT
Subjt:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLF-SFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPT

Query:  IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
Subjt:  IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV

XP_038875517.1 tRNA pseudouridine synthase A 1 isoform X2 [Benincasa hispida]5.13e-3762.04Show/hide
Query:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLFSFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTI
        MRCWAVGSPVLPPISLPLSP IP PNGASSSSSRG P                  N  D +       P     LL +A +G   +       QRSPPTI
Subjt:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLFSFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTI

Query:  QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
Subjt:  QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV

XP_038875518.1 tRNA pseudouridine synthase A 1 isoform X3 [Benincasa hispida]4.59e-3762.04Show/hide
Query:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLFSFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTI
        MRCWAVGSPVLPPISLPLSP IP PNGASSSSSRG P                  N  D +       P     LL +A +G   +       QRSPPTI
Subjt:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLFSFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTI

Query:  QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
Subjt:  QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV

TrEMBL top hitse value%identityAlignment
A0A0A0KB67 tRNA pseudouridine synthase2.4e-3264.23Show/hide
Query:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLFSFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTI
        MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFP                  N  D A           K  L +A +G   +       QRSPPTI
Subjt:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLFSFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTI

Query:  QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
Subjt:  QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV

A0A1S3C7H4 tRNA pseudouridine synthase3.8e-3094.59Show/hide
Query:  RMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        RMRR+PLIS+S LS ASNGGCSSLMTVLDMQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
Subjt:  RMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV

A0A1S3C7L6 tRNA pseudouridine synthase2.4e-3263.77Show/hide
Query:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLF-SFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPT
        MRCWAVGSPVLPPISLP SPIIPSPNGASSSSSRGFP       I++  F SF W                     L +A +G   +       QRSPPT
Subjt:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLF-SFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPT

Query:  IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
Subjt:  IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV

A0A5D3BY40 Protein TRIGALACTOSYLDIACYLGLYCEROL 42.4e-3263.77Show/hide
Query:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLF-SFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPT
        MRCWAVGSPVLPPISLP SPIIPSPNGASSSSSRGFP       I++  F SF W                     L +A +G   +       QRSPPT
Subjt:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLF-SFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPT

Query:  IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
Subjt:  IQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV

A0A6J1L2M8 tRNA pseudouridine synthase1.0e-2254.01Show/hide
Query:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLFSFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTI
        M CWAVGS VLP +  PLSP IPS  G  SS+ RGFPV                 N  D +       P   K  L +A +G   +       QRSPPTI
Subjt:  MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLFSFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTI

Query:  QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        QCLIEEAL GAT+LERKDLHLVGASRTDKGVHAWGQV
Subjt:  QCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G06950.1 Pseudouridine synthase family protein7.9e-1268.18Show/hide
Query:  QRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV
        Q SPPTIQ ++E+ALI  T+L RK+L L+GA RTD GVHAWGQV
Subjt:  QRSPPTIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTGCTGGGCGGTGGGTTCGCCTGTTCTTCCTCCAATTTCCCTTCCCCTTTCACCAATCATTCCATCTCCAAATGGCGCTTCATCTTCCTCCAGTCGTGGATTCCC
GGTAACGACAATTCCTTTTCTGATCTCTCAGTTCCTCTTTTCATTTTGGTGGTTTAATTTGTTTGATCGTGCCTTGAAAAGAATGCGGAGGATGCCTCTTATATCAAAGA
GCCTTCTTTCCCTAGCTTCAAATGGCGGTTGCTCATCGCTTATGACGGTACTCGATATGCAGAGGTCACCACCCACTATCCAGTGCCTCATTGAAGAAGCCTTGATTGGA
GCAACAAAGCTTGAAAGGAAGGATCTTCATTTAGTTGGTGCAAGCAGAACAGATAAAGGAGTACATGCCTGGGGTCAGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTGCTGGGCGGTGGGTTCGCCTGTTCTTCCTCCAATTTCCCTTCCCCTTTCACCAATCATTCCATCTCCAAATGGCGCTTCATCTTCCTCCAGTCGTGGATTCCC
GGTAACGACAATTCCTTTTCTGATCTCTCAGTTCCTCTTTTCATTTTGGTGGTTTAATTTGTTTGATCGTGCCTTGAAAAGAATGCGGAGGATGCCTCTTATATCAAAGA
GCCTTCTTTCCCTAGCTTCAAATGGCGGTTGCTCATCGCTTATGACGGTACTCGATATGCAGAGGTCACCACCCACTATCCAGTGCCTCATTGAAGAAGCCTTGATTGGA
GCAACAAAGCTTGAAAGGAAGGATCTTCATTTAGTTGGTGCAAGCAGAACAGATAAAGGAGTACATGCCTGGGGTCAGGTCTGA
Protein sequenceShow/hide protein sequence
MRCWAVGSPVLPPISLPLSPIIPSPNGASSSSSRGFPVTTIPFLISQFLFSFWWFNLFDRALKRMRRMPLISKSLLSLASNGGCSSLMTVLDMQRSPPTIQCLIEEALIG
ATKLERKDLHLVGASRTDKGVHAWGQV