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Chy11G202060 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G202060
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchrH11:22778828..22782515
RNA-Seq ExpressionChy11G202060
SyntenyChy11G202060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45638.2 hypothetical protein Csa_005465, partial [Cucumis sativus]7.31e-7098.18Show/hide
Query:  MFVFILDEIHSFVDAVSILAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSH
        MFVFILDEIHSFVDAVS LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMF LERTGFSSLTFSFADSH
Subjt:  MFVFILDEIHSFVDAVSILAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSH

Query:  HADLTFCSRD
        HADLTFCSRD
Subjt:  HADLTFCSRD

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.22e-9492.41Show/hide
Query:  MFVFILDEIHSFVDAVSILAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSH
        MFVFIL+EIHSFVDAVS+LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYIN FFPEMFD+ERTGFSSLTFSFADS 
Subjt:  MFVFILDEIHSFVDAVSILAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSH

Query:  HADLTFCSRDGRFREIDFPMYHSDELMDVS-DQLDWETFVSFSSQEFINIVTLNNFDS
        HADLTFCSRDG  REIDFPMYHSD  MD   DQLDWETFVSFSSQEFINIVTLNNFDS
Subjt:  HADLTFCSRDGRFREIDFPMYHSDELMDVS-DQLDWETFVSFSSQEFINIVTLNNFDS

XP_008458268.1 PREDICTED: uncharacterized protein LOC103497737 [Cucumis melo]3.51e-8791.89Show/hide
Query:  KESLRRLASDKRDSLMSNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLIRDLNDHTARVTVARSSVRFTSSKLLNIGFTKQSGNCIIGGIKKVKDEM
        KE +    SDKRDSL SNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTL+RDLNDHTARVTVARSSVRFTSSK+LNIGFTKQSGNCIIGGIKKVKDE+
Subjt:  KESLRRLASDKRDSLMSNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLIRDLNDHTARVTVARSSVRFTSSKLLNIGFTKQSGNCIIGGIKKVKDEM

Query:  KFTLTFRPVPFFDSFSTKRVWFFRPSLSNCMAMVSPVNLHAEITSYFV
        KFT+TFRPVPFFDSFSTKRVWFF+PSLSNCMAMVSPVNLHAEITSYFV
Subjt:  KFTLTFRPVPFFDSFSTKRVWFFRPSLSNCMAMVSPVNLHAEITSYFV

XP_023006011.1 uncharacterized protein LOC111498888 [Cucurbita maxima]5.58e-5048.02Show/hide
Query:  HSFVDAVSILAGL-GYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSHHADLTFCS
        H  VDA S+LA     +F++KFSP MFSIMA  TPS  C IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D     
Subjt:  HSFVDAVSILAGL-GYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSHHADLTFCS

Query:  R-------------------------------DGRFREIDFPMYHSDELMDVSDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTITNSQVKFSYAGTHM
        R                               +G F E++ PM+ S ++MDV    D+ TFVS  SQEFINIVT  N+FD VLVT+TNSQV FSY  T +
Subjt:  R-------------------------------DGRFREIDFPMYHSDELMDVSDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTITNSQVKFSYAGTHM

Query:  MLTRERRRCIIGGVGVSNEIDFVVNLK
        +LT+ERR+CIIGGV  S E+ FV++L+
Subjt:  MLTRERRRCIIGGVGVSNEIDFVVNLK

XP_031743963.1 uncharacterized protein LOC116404740 [Cucumis sativus]1.24e-8793.24Show/hide
Query:  KESLRRLASDKRDSLMSNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLIRDLNDHTARVTVARSSVRFTSSKLLNIGFTKQSGNCIIGGIKKVKDEM
        KE +    SDKRDSLMSNVRTLDKLPLDTQ IPSIQYDAFFTMETELFKTLIRDLNDHTARVTVARSSVRFTSSKLLNIGFTKQS NCIIGGIKKVKDEM
Subjt:  KESLRRLASDKRDSLMSNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLIRDLNDHTARVTVARSSVRFTSSKLLNIGFTKQSGNCIIGGIKKVKDEM

Query:  KFTLTFRPVPFFDSFSTKRVWFFRPSLSNCMAMVSPVNLHAEITSYFV
        KFT+TFRPVPFFDSFSTKRVWFFRPSLSNCMAMVSPVNLH+EITSYFV
Subjt:  KFTLTFRPVPFFDSFSTKRVWFFRPSLSNCMAMVSPVNLHAEITSYFV

TrEMBL top hitse value%identityAlignment
A0A0A0K833 Uncharacterized protein1.8e-5598.2Show/hide
Query:  MFVFILDEIHSFVDAVSILAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSH
        MFVFILDEIHSFVDAVS LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMF LERTGFSSLTFSFADSH
Subjt:  MFVFILDEIHSFVDAVSILAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSH

Query:  HADLTFCSRDG
        HADLTFCSRDG
Subjt:  HADLTFCSRDG

A0A1S3C702 uncharacterized protein LOC1034977377.4e-7091.89Show/hide
Query:  KESLRRLASDKRDSLMSNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLIRDLNDHTARVTVARSSVRFTSSKLLNIGFTKQSGNCIIGGIKKVKDEM
        KE +    SDKRDSL SNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTL+RDLNDHTARVTVARSSVRFTSSK+LNIGFTKQSGNCIIGGIKKVKDE+
Subjt:  KESLRRLASDKRDSLMSNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLIRDLNDHTARVTVARSSVRFTSSKLLNIGFTKQSGNCIIGGIKKVKDEM

Query:  KFTLTFRPVPFFDSFSTKRVWFFRPSLSNCMAMVSPVNLHAEITSYFV
        KFT+TFRPVPFFDSFSTKRVWFF+PSLSNCMAMVSPVNLHAEITSYFV
Subjt:  KFTLTFRPVPFFDSFSTKRVWFFRPSLSNCMAMVSPVNLHAEITSYFV

A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein5.3e-7692.41Show/hide
Query:  MFVFILDEIHSFVDAVSILAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSH
        MFVFIL+EIHSFVDAVS+LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYIN FFPEMFD+ERTGFSSLTFSFADS 
Subjt:  MFVFILDEIHSFVDAVSILAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSH

Query:  HADLTFCSRDGRFREIDFPMYHSDELMDVS-DQLDWETFVSFSSQEFINIVTLNNFDS
        HADLTFCSRDG  REIDFPMYHSD  MD   DQLDWETFVSFSSQEFINIVTLNNFDS
Subjt:  HADLTFCSRDGRFREIDFPMYHSDELMDVS-DQLDWETFVSFSSQEFINIVTLNNFDS

A0A6J1H4N0 uncharacterized protein LOC1114600097.9e-4046.93Show/hide
Query:  IHSFVDAVSILA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSHHADLT--
        +H  VDA S+LA     +F++KFSP MFSIMA  TPS  C I LQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D    
Subjt:  IHSFVDAVSILA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSHHADLT--

Query:  -----------------------------FCSRDGRFREIDFPMYHSDELMDVSDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTITNSQVKFSYAGTH
                                     F   +G F E++ PM+ S ++MDV    D  TFVS  SQEFINIVT  N+FD VLVT+ NSQV FSY  T 
Subjt:  -----------------------------FCSRDGRFREIDFPMYHSDELMDVSDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTITNSQVKFSYAGTH

Query:  MMLTRERRRCIIGGVGVSNEIDFVVNLK
        ++LT ERR+CIIGGV  S+E+ FV++L+
Subjt:  MMLTRERRRCIIGGVGVSNEIDFVVNLK

A0A6J1KWL1 uncharacterized protein LOC1114988882.5e-4147.81Show/hide
Query:  IHSFVDAVSILA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSHHADLT--
        +H  VDA S+LA     +F++KFSP MFSIMA  TPS  C IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D    
Subjt:  IHSFVDAVSILA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSHHADLT--

Query:  -----------------------------FCSRDGRFREIDFPMYHSDELMDVSDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTITNSQVKFSYAGTH
                                     F   +G F E++ PM+ S ++MDV    D+ TFVS  SQEFINIVT  N+FD VLVT+TNSQV FSY  T 
Subjt:  -----------------------------FCSRDGRFREIDFPMYHSDELMDVSDQLDWETFVSFSSQEFINIVT-LNNFDSVLVTITNSQVKFSYAGTH

Query:  MMLTRERRRCIIGGVGVSNEIDFVVNLK
        ++LT+ERR+CIIGGV  S E+ FV++L+
Subjt:  MMLTRERRRCIIGGVGVSNEIDFVVNLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGTCTTCATACTCGACGAAATCCACAGCTTCGTCGATGCCGTCTCCATCCTCGCCGGCCTTGGCTACGTATTCAATCTCAAATTCTCACCAGAAATGTTCTCAAT
AATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTGCAACTATTTCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACA
TCAACCATTTTTTCCCCGAAATGTTCGATTTGGAACGAACCGGTTTTTCTTCGCTCACATTCTCTTTTGCAGATTCGCATCATGCCGACCTCACATTTTGCAGTCGTGAT
GGCCGTTTTCGAGAGATTGATTTCCCAATGTATCATTCGGACGAGTTGATGGATGTCAGTGATCAGTTGGATTGGGAAACTTTCGTCTCCTTCAGTTCACAAGAGTTTAT
TAACATTGTAACGTTGAATAATTTTGATTCTGTTTTAGTCACAATAACGAATTCACAAGTCAAATTCTCTTATGCTGGGACACATATGATGCTTACTCGAGAGAGAAGAC
GATGCATTATTGGTGGAGTTGGAGTAAGTAATGAAATTGACTTTGTAGTAAATTTGAAAGCAAAGGAAAGTTTACGTAGATTGGCAAGTGATAAGAGAGATTCCTTAATG
TCAAATGTACGTACATTAGATAAACTTCCTCTTGATACGCAAAAGATTCCCTCAATTCAATATGATGCATTCTTCACTATGGAAACAGAACTATTCAAAACCCTTATACG
TGATTTAAATGATCATACAGCTAGGGTTACTGTAGCACGTTCATCTGTGAGATTCACTTCCAGTAAATTGTTGAACATTGGATTTACTAAACAATCTGGGAATTGCATAA
TCGGAGGCATTAAAAAAGTGAAAGATGAAATGAAATTTACACTCACTTTCAGGCCAGTTCCGTTCTTCGATAGCTTCTCAACAAAAAGGGTTTGGTTCTTTAGACCAAGT
TTGAGTAATTGCATGGCAATGGTTTCTCCTGTTAATCTTCATGCTGAAATTACTTCCTACTTTGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGTCTTCATACTCGACGAAATCCACAGCTTCGTCGATGCCGTCTCCATCCTCGCCGGCCTTGGCTACGTATTCAATCTCAAATTCTCACCAGAAATGTTCTCAAT
AATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTGCAACTATTTCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACA
TCAACCATTTTTTCCCCGAAATGTTCGATTTGGAACGAACCGGTTTTTCTTCGCTCACATTCTCTTTTGCAGATTCGCATCATGCCGACCTCACATTTTGCAGTCGTGAT
GGCCGTTTTCGAGAGATTGATTTCCCAATGTATCATTCGGACGAGTTGATGGATGTCAGTGATCAGTTGGATTGGGAAACTTTCGTCTCCTTCAGTTCACAAGAGTTTAT
TAACATTGTAACGTTGAATAATTTTGATTCTGTTTTAGTCACAATAACGAATTCACAAGTCAAATTCTCTTATGCTGGGACACATATGATGCTTACTCGAGAGAGAAGAC
GATGCATTATTGGTGGAGTTGGAGTAAGTAATGAAATTGACTTTGTAGTAAATTTGAAAGCAAAGGAAAGTTTACGTAGATTGGCAAGTGATAAGAGAGATTCCTTAATG
TCAAATGTACGTACATTAGATAAACTTCCTCTTGATACGCAAAAGATTCCCTCAATTCAATATGATGCATTCTTCACTATGGAAACAGAACTATTCAAAACCCTTATACG
TGATTTAAATGATCATACAGCTAGGGTTACTGTAGCACGTTCATCTGTGAGATTCACTTCCAGTAAATTGTTGAACATTGGATTTACTAAACAATCTGGGAATTGCATAA
TCGGAGGCATTAAAAAAGTGAAAGATGAAATGAAATTTACACTCACTTTCAGGCCAGTTCCGTTCTTCGATAGCTTCTCAACAAAAAGGGTTTGGTTCTTTAGACCAAGT
TTGAGTAATTGCATGGCAATGGTTTCTCCTGTTAATCTTCATGCTGAAATTACTTCCTACTTTGTCTAA
Protein sequenceShow/hide protein sequence
MFVFILDEIHSFVDAVSILAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDLERTGFSSLTFSFADSHHADLTFCSRD
GRFREIDFPMYHSDELMDVSDQLDWETFVSFSSQEFINIVTLNNFDSVLVTITNSQVKFSYAGTHMMLTRERRRCIIGGVGVSNEIDFVVNLKAKESLRRLASDKRDSLM
SNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLIRDLNDHTARVTVARSSVRFTSSKLLNIGFTKQSGNCIIGGIKKVKDEMKFTLTFRPVPFFDSFSTKRVWFFRPS
LSNCMAMVSPVNLHAEITSYFV