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Chy11G203210 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy11G203210
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGlycine--tRNA ligase
Genome locationchrH11:23809204..23809859
RNA-Seq ExpressionChy11G203210
SyntenyChy11G203210
Gene Ontology termsGO:0006426 - glycyl-tRNA aminoacylation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0004820 - glycine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR002310 - Glycine-tRNA ligase, alpha subunit
IPR006194 - Glycine-tRNA synthetase, heterodimeric


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140508.3 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucumis sativus]5.02e-6694.78Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MSAYYLEHANVHQVQKHFNIF EEAHS LALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQC QLWLKTR+ LGHPLGVASDPVDL
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VCPKELLDAAIKKV+
Subjt:  VCPKELLDAAIKKVN

XP_011656852.2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X2 [Cucumis sativus]1.13e-6694.78Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MSAYYLEHANVHQVQKHFNIF EEAHS LALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQC QLWLKTR+ LGHPLGVASDPVDL
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VCPKELLDAAIKKV+
Subjt:  VCPKELLDAAIKKVN

XP_016902503.1 PREDICTED: glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X2 [Cucumis melo]6.84e-6592.17Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MSAYYLEHANVHQVQKHF+IF EEAHS LALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQC QLWLKTR+ LGHPLGV SDPVDL
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VCPKELLDAA+KKV+
Subjt:  VCPKELLDAAIKKVN

XP_016902504.1 PREDICTED: glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X3 [Cucumis melo]3.00e-6592.17Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MSAYYLEHANVHQVQKHF+IF EEAHS LALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQC QLWLKTR+ LGHPLGV SDPVDL
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VCPKELLDAA+KKV+
Subjt:  VCPKELLDAAIKKVN

XP_022156974.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X3 [Momordica charantia]2.16e-6592.17Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MSAYYLEHANVHQVQKHFNIF EEAHS LALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQC QLWLKTR+ LGHPLGV SDPVDL
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VCPKELL+AA+KKV+
Subjt:  VCPKELLDAAIKKVN

TrEMBL top hitse value%identityAlignment
A0A0A0KFM2 Glycine--tRNA ligase2.6e-5493.91Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MSAYYLEHANVHQVQKHFNIF EEAHS LALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQC QLWL TR+ LGHPLGVASDPVDL
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VCPKELLDAAIKKV+
Subjt:  VCPKELLDAAIKKVN

A0A1S3CB07 Glycine--tRNA ligase4.4e-5492.17Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MSAYYLEHANVHQVQKHF+IF EEAHS LALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQC QLWLKTR+ LGHPLGV SDPVDL
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VCPKELLDAA+KKV+
Subjt:  VCPKELLDAAIKKVN

A0A1S4E2Q4 Glycine--tRNA ligase4.4e-5492.17Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MSAYYLEHANVHQVQKHF+IF EEAHS LALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQC QLWLKTR+ LGHPLGV SDPVDL
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VCPKELLDAA+KKV+
Subjt:  VCPKELLDAAIKKVN

A0A6J1DV61 Glycine--tRNA ligase3.3e-5492.17Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MSAYYLEHANVHQVQKHFNIF EEAHS LALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQC QLWLKTR+ LGHPLGV SDPVDL
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VCPKELL+AA+KKV+
Subjt:  VCPKELLDAAIKKVN

A0A6J1DWK5 Glycine--tRNA ligase3.3e-5492.17Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MSAYYLEHANVHQVQKHFNIF EEAHS LALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQC QLWLKTR+ LGHPLGV SDPVDL
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VCPKELL+AA+KKV+
Subjt:  VCPKELLDAAIKKVN

SwissProt top hitse value%identityAlignment
B0B923 Glycine--tRNA ligase4.9e-1847.62Show/hide
Query:  SAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDLV
        S Y  E AN     KHF+ F  EA + L  GL +PAYD V+KASHAFN+LDSRG I VTER RY  ++R LAR     ++  R+ LG PL         V
Subjt:  SAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDLV

Query:  CPKEL
         PK++
Subjt:  CPKEL

P0CE22 Glycine--tRNA ligase4.9e-1847.62Show/hide
Query:  SAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDLV
        S Y  E AN     KHF+ F  EA + L  GL +PAYD V+KASHAFN+LDSRG I VTER RY  ++R LAR     ++  R+ LG PL         V
Subjt:  SAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDLV

Query:  CPKEL
         PK++
Subjt:  CPKEL

Q2RQ44 Glycine--tRNA ligase alpha subunit3.7e-1851.16Show/hide
Query:  SAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFL
        SA+  E+AN   + +HF    EE  + LA G+ +PAYDQ +KASH FN+LD+RG I VTERA Y GR+R+LA+ C + WL+ R  L
Subjt:  SAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFL

Q8L785 Glycine--tRNA ligase, chloroplastic/mitochondrial 24.4e-4373.04Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MS+YYLEHA+V ++QKHF+ F EEA S LALGL IPAYDQ+LK SHAFNILD+RGFIGVTERARYFGRMRSLARQC QLWL TR+ LGHPLGVAS+PV  
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VC +  L+   +KV+
Subjt:  VCPKELLDAAIKKVN

Q9Z6W0 Glycine--tRNA ligase3.7e-1843.86Show/hide
Query:  SAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDLV
        S Y  ++AN     KHF  F EEA   L  GL++PAYD V+KASHAFNILD+RG I VTER RY  R+R L R     +++ R  L +PL   S   +  
Subjt:  SAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDLV

Query:  CPKELLDAAIKKVN
         PKE  ++ +  ++
Subjt:  CPKELLDAAIKKVN

Arabidopsis top hitse value%identityAlignment
AT3G48110.1 glycine-tRNA ligases3.1e-4473.04Show/hide
Query:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL
        MS+YYLEHA+V ++QKHF+ F EEA S LALGL IPAYDQ+LK SHAFNILD+RGFIGVTERARYFGRMRSLARQC QLWL TR+ LGHPLGVAS+PV  
Subjt:  MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDL

Query:  VCPKELLDAAIKKVN
        VC +  L+   +KV+
Subjt:  VCPKELLDAAIKKVN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCATATTATTTAGAACATGCCAACGTTCACCAGGTTCAGAAACATTTCAACATCTTTGTGGAAGAAGCTCATTCGTTTCTTGCTTTAGGATTAGCAATC
CCTGCGTATGATCAGGTTTTGAAGGCATCTCATGCTTTCAACATATTGGACTCAAGAGGCTTCATTGGAGTAACCGAGCGTGCTCGTTATTTTGGTCGAATGCGA
AGTTTAGCTCGTCAGTGTGTGCAACTGTGGCTGAAAACCCGAGACTTCCTAGGTCATCCACTTGGTGTTGCTTCTGATCCTGTTGATCTTGTATGTCCTAAAGAA
CTTCTGGATGCAGCGATCAAAAAGGTTAATATATATATATATATATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCATATTATTTAGAACATGCCAACGTTCACCAGGTTCAGAAACATTTCAACATCTTTGTGGAAGAAGCTCATTCGTTTCTTGCTTTAGGATTAGCAATC
CCTGCGTATGATCAGGTTTTGAAGGCATCTCATGCTTTCAACATATTGGACTCAAGAGGCTTCATTGGAGTAACCGAGCGTGCTCGTTATTTTGGTCGAATGCGA
AGTTTAGCTCGTCAGTGTGTGCAACTGTGGCTGAAAACCCGAGACTTCCTAGGTCATCCACTTGGTGTTGCTTCTGATCCTGTTGATCTTGTATGTCCTAAAGAA
CTTCTGGATGCAGCGATCAAAAAGGTTAATATATATATATATATATGTTGA
Protein sequenceShow/hide protein sequence
MSAYYLEHANVHQVQKHFNIFVEEAHSFLALGLAIPAYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCVQLWLKTRDFLGHPLGVASDPVDLVCPKE
LLDAAIKKVNIYIYIC