CuGenDBv2

Gene ID	Chy12G210380
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	twinkle homolog protein, chloroplastic/mitochondrial isoform X1
Genome location	chrH12:5319650..5321145
RNA-Seq Expression	Chy12G210380
Synteny	Chy12G210380
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0003697 - single-stranded DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047076.1 twinkle-like protein [Cucumis melo var. makuwa]

1.26e-60

86.21

Show/hide

Query:  MKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQDFINLVSELSKKGLMVGRN
        MKPNG SSFTSHANVP+PPA  ENP DKA SST LNILRKKLQDL IDIEACVPGQF  LLCPMILIRRIKTSV LFELLQDFINLVSEL KKGLMVGRN
Subjt:  MKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQDFINLVSELSKKGLMVGRN

Query:  PANIGKGKRVNEQPLE
        PAN GKGKR +EQP E
Subjt:  PANIGKGKRVNEQPLE

XP_011659233.2 twinkle homolog protein, chloroplastic/mitochondrial [Cucumis sativus]

1.16e-36

97.22

Show/hide

Query:  MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM
        MSLVKPFAMKPNGVSSFTSHANVP+PPALLENP DKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM
Subjt:  MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM

XP_011659240.2 twinkle homolog protein, chloroplastic/mitochondrial isoform X5 [Cucumis sativus]

1.88e-33

91.67

Show/hide

Query:  MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM
        +SLVKPFAMKPNGVSSFTSHANVP+PPALL NP DKAS STRLNILRKKLQDLDIDIEACVPGQF SLLCPM
Subjt:  MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM

XP_031736081.1 twinkle homolog protein, chloroplastic/mitochondrial isoform X3 [Cucumis sativus]

2.41e-33

91.67

Show/hide

Query:  MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM
        +SLVKPFAMKPNGVSSFTSHANVP+PPALL NP DKAS STRLNILRKKLQDLDIDIEACVPGQF SLLCPM
Subjt:  MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM

XP_031736083.1 twinkle homolog protein, chloroplastic/mitochondrial isoform X4 [Cucumis sativus]

2.30e-33

91.67

Show/hide

Query:  MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM
        +SLVKPFAMKPNGVSSFTSHANVP+PPALL NP DKAS STRLNILRKKLQDLDIDIEACVPGQF SLLCPM
Subjt:  MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LVL8 Toprim domain-containing protein

1.5e-23

75.61

Show/hide

Query:  MKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQD
        MKPNGVSSFTSHANVP+PPALL NP DKAS STRLNILRKKLQDLDIDIEACVPGQF SLLCPM      K   F   + +D
Subjt:  MKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQD

A0A0A0LYM8 Uncharacterized protein

1.6e-30

95.83

Show/hide

Query:  MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM
        +SLVKPFAMKPNGVSSFTSHANVP+PPALLENP DKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM
Subjt:  MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPM

A0A1S3BD14 twinkle homolog protein, chloroplastic/mitochondrial isoform X2

1.3e-24

71.91

Show/hide

Query:  SLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQD
        SLVKPFAMKPNG SSFTSHANVP+PPA  ENP DKA SST LNILRKKLQDL IDIEACVPGQF  LLCPM      K   F   + +D
Subjt:  SLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQD

A0A1S3BDI3 twinkle homolog protein, chloroplastic/mitochondrial isoform X1

1.3e-24

71.91

Show/hide

Query:  SLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQD
        SLVKPFAMKPNG SSFTSHANVP+PPA  ENP DKA SST LNILRKKLQDL IDIEACVPGQF  LLCPM      K   F   + +D
Subjt:  SLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQD

A0A5A7TYL9 Twinkle-like protein

2.1e-46

86.21

Show/hide

Query:  MKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQDFINLVSELSKKGLMVGRN
        MKPNG SSFTSHANVP+PPA  ENP DKA SST LNILRKKLQDL IDIEACVPGQF  LLCPMILIRRIKTSV LFELLQDFINLVSEL KKGLMVGRN
Subjt:  MKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQDFINLVSELSKKGLMVGRN

Query:  PANIGKGKRVNEQPLE
        PAN GKGKR +EQP E
Subjt:  PANIGKGKRVNEQPLE

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

5.1e-05

40.91

Show/hide

Query:  PFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCP
        P+  + NG+SS+ S   VP  P   E   DK    +RL  LR+KL +  +D E C PGQ   L+CP
Subjt:  PFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCP

Arabidopsis top hits

e value

%identity

Alignment

AT1G30680.1 toprim domain-containing protein

3.6e-06

40.91

Show/hide

Query:  PFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCP
        P+  + NG+SS+ S   VP  P   E   DK    +RL  LR+KL +  +D E C PGQ   L+CP
Subjt:  PFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCCCTTGTGAAACCCTTTGCCATGAAACCAAATGGGGTTTCTTCTTTTACTTCTCATGCCAATGTTCCCAAACCTCCAGCCCTTTTGGAGAATCCACTAGACAAGGC
TTCAAGCTCCACTCGATTGAATATTCTGAGAAAAAAATTGCAGGATCTTGACATTGACATCGAAGCTTGTGTTCCTGGGCAGTTTTACAGTTTGCTTTGTCCAATGATTT
TAATAAGAAGAATAAAGACTTCAGTTTTTTTGTTTGAACTTCTCCAAGACTTCATCAACTTGGTATCGGAGCTCTCGAAGAAGGGACTCATGGTGGGAAGGAACCCAGCC
AACATTGGCAAAGGCAAGCGTGTCAATGAGCAACCCTTGGAACCAAAGAGATTCTCTCACTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQDFINLVSELSKKGLMVGRNPA
NIGKGKRVNEQPLEPKRFSH

Chy12G210380 (gene) of Cucumber (hystrix) v1 genome