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Chy12G213530 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy12G213530
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionhistone H2B type 1-A-like
Genome locationchrH12:11574742..11575757
RNA-Seq ExpressionChy12G213530
SyntenyChy12G213530
Gene Ontology termsGO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052101.1 histone H2B type 1-A-like [Cucumis melo var. makuwa]1.63e-5289.62Show/hide
Query:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAH--PQQPITHPVSEDFELRRATDSTSQLTEDTAVT
        MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPVEEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVT
Subjt:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAH--PQQPITHPVSEDFELRRATDSTSQLTEDTAVT

Query:  PEMEPE
        PEMEPE
Subjt:  PEMEPE

TYJ98095.1 histone H2B type 1-A-like [Cucumis melo var. makuwa]1.21e-5388.99Show/hide
Query:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAH--PQQPITHPVSEDFELRRATDSTSQLTEDTAVT
        MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPVEEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVT
Subjt:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAH--PQQPITHPVSEDFELRRATDSTSQLTEDTAVT

Query:  PEMEPEVRK
        PEMEPEV K
Subjt:  PEMEPEVRK

XP_008462313.1 PREDICTED: histone H2B type 1-A-like [Cucumis melo]2.82e-5489.09Show/hide
Query:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAH--PQQPITHPVSEDFELRRATDSTSQLTEDTAVT
        MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPVEEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVT
Subjt:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAH--PQQPITHPVSEDFELRRATDSTSQLTEDTAVT

Query:  PEMEPEVRKG
        PEMEPEV+KG
Subjt:  PEMEPEVRKG

XP_031736247.1 histone H2B [Cucumis sativus]2.43e-6094.44Show/hide
Query:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPE
        MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AETP GGGE+FRRTVPVEEIKAHPQQPI+HPVSEDFELRRATDSTSQLTEDTAVTPE
Subjt:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPE

Query:  MEPEVRKG
        MEP++RKG
Subjt:  MEPEVRKG

XP_038894659.1 LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida]3.54e-4477.06Show/hide
Query:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYG-GGEVFRRTVPVEEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTP
        MPPRRSRRVVGSVVRTTTR+VEETVQVAV+EKESQDLTQEP+T +T  G GG+VFRRT+PVEE     +QP T PVSEDF+ R+ TDSTSQLTEDTA TP
Subjt:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYG-GGEVFRRTVPVEEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTP

Query:  EMEPEVRKG
        E+EPEVR G
Subjt:  EMEPEVRKG

TrEMBL top hitse value%identityAlignment
A0A0A0LSH9 Histone domain-containing protein6.9e-4794.44Show/hide
Query:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPE
        MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AETP GGGE+FRRTVPVEEIKAHPQQPI+HPVSEDFELRRATDSTSQLTEDTAVTPE
Subjt:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPE

Query:  MEPEVRKG
        MEP++RKG
Subjt:  MEPEVRKG

A0A1S3CH74 histone H2B type 1-A-like3.0e-4289.09Show/hide
Query:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKA--HPQQPITHPVSEDFELRRATDSTSQLTEDTAVT
        MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPVEEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVT
Subjt:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKA--HPQQPITHPVSEDFELRRATDSTSQLTEDTAVT

Query:  PEMEPEVRKG
        PEMEPEV+KG
Subjt:  PEMEPEVRKG

A0A5A7UF12 Histone H2B type 1-A-like2.2e-4089.62Show/hide
Query:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKA--HPQQPITHPVSEDFELRRATDSTSQLTEDTAVT
        MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPVEEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVT
Subjt:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKA--HPQQPITHPVSEDFELRRATDSTSQLTEDTAVT

Query:  PEMEPE
        PEMEPE
Subjt:  PEMEPE

A0A5D3BHX3 Histone H2B type 1-A-like3.3e-4188.99Show/hide
Query:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKA--HPQQPITHPVSEDFELRRATDSTSQLTEDTAVT
        MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAET  GGGE+FRR VPVEEIK+   P+QPITHPVSE+FE+RRATDSTSQLTEDTAVT
Subjt:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKA--HPQQPITHPVSEDFELRRATDSTSQLTEDTAVT

Query:  PEMEPEVRK
        PEMEPEV K
Subjt:  PEMEPEVRK

A0A6J1FGB7 histone H2B.1-like isoform X21.6e-2264.81Show/hide
Query:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPE
        MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP TAET  GG  VFRRT+PVE+       P T PV  D +L R  DSTS++TED  VT +
Subjt:  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPE

Query:  MEPEVRKG
        ME + R G
Subjt:  MEPEVRKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTCGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTT
AACTCAAGAACCTGACACGGCAGAAACCCCCTACGGTGGCGGTGAAGTATTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAACTCATC
CAGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCGGTGACTCCGGAGATGGAACCCGAGGTCCGGAAAGGGGGCGGT
GAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTCGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTT
AACTCAAGAACCTGACACGGCAGAAACCCCCTACGGTGGCGGTGAAGTATTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAACTCATC
CAGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCGGTGACTCCGGAGATGGAACCCGAGGTCCGGAAAGGGGGCGGT
GAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGA
Protein sequenceShow/hide protein sequence
MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETPYGGGEVFRRTVPVEEIKAHPQQPITHPVSEDFELRRATDSTSQLTEDTAVTPEMEPEVRKGGG
EVGVTRGAGEARHC