; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy12G219330 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy12G219330
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptiontranscription factor PRE3-like
Genome locationchrH12:17673092..17673488
RNA-Seq ExpressionChy12G219330
SyntenyChy12G219330
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012197.1 Transcription factor PRE3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.87e-4995.56Show/hide
Query:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS+VRISDEQI DLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIR+LHREVDDLSERLSELL TSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_004152438.1 transcription factor PRE3 [Cucumis sativus]1.60e-5097.78Show/hide
Query:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSSSVRISDEQI DLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_016899225.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]6.51e-5096.67Show/hide
Query:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQI DLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_022955105.1 transcription factor PRE3-like [Cucurbita moschata]4.58e-5096.67Show/hide
Query:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS+VRISDEQI DLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_023542851.1 transcription factor PRE3-like [Cucurbita pepo subsp. pepo]6.51e-5095.56Show/hide
Query:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS++RISDEQI DLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ1 BHLH domain-containing protein2.8e-3797.78Show/hide
Query:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSSSVRISDEQI DLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A1S4DU40 transcription factor PRE3-like8.1e-3796.67Show/hide
Query:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQI DLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A5D3BJ22 Transcription factor PRE3-like1.3e-3496.51Show/hide
Query:  SRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        SRSRQSS VRISDEQI DLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  SRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1GU92 transcription factor PRE3-like6.2e-3796.67Show/hide
Query:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQSS+VRISDEQI DLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1K5U5 transcription factor PRE3-like5.2e-3695.56Show/hide
Query:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG SRSRQSS+VRISDEQI DLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI78.1e-2672.22Show/hide
Query:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS RSRSR SS+ RI+DEQI DLV KLQ LLPE R R +D+V +A+VLQETC+YIR+LHREVDDLSERL+ELLA +D  TAQAA+IR LL
Subjt:  MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

B8APB5 Transcription factor ILI69.5e-2776.4Show/hide
Query:  SGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQS S RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIR+LH+EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q0DUR2 Transcription factor ILI69.5e-2776.4Show/hide
Query:  SGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQS S RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIR+LH+EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q8GW32 Transcription factor PRE63.9e-2877.17Show/hide
Query:  MSGR--SRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS R  SRSRQS S RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIRNLHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE31.4e-3082.8Show/hide
Query:  MSG-RSRSRQSSSV-RISDEQINDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG RSRSRQSS   RIS++QINDL+ KLQQLLPE+R +R SDKVSAA+VLQ+TCNYIRNLHREVDDLSERLSELLA SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQSSSV-RISDEQINDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.7e-2977.17Show/hide
Query:  MSGR--SRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS R  SRSRQS S RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIRNLHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.0e-3182.8Show/hide
Query:  MSG-RSRSRQSSSV-RISDEQINDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG RSRSRQSS   RIS++QINDL+ KLQQLLPE+R +R SDKVSAA+VLQ+TCNYIRNLHREVDDLSERLSELLA SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQSSSV-RISDEQINDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

AT3G47710.1 BANQUO 35.4e-2567.78Show/hide
Query:  SGRSRSRQSSSVRISDEQINDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        S +SRSRQ+ +  I+DEQINDLV +L +LLPE+  NR S KVSA++VLQETC+YIRNL +EVDDLSERLS+LL ++D+AQAA+IRSLL Q
Subjt:  SGRSRSRQSSSVRISDEQINDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

AT5G15160.1 BANQUO 23.2e-2265.22Show/hide
Query:  MSGRSRSRQ-SSSVRISDEQINDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS   RSRQ SSS RISD+QI DL+ KL+Q +PEIR NR S+ VSA+KVLQETCNYIRNL++E DDLS+RL++LL + D  + QAA+IRSL+
Subjt:  MSGRSRSRQ-SSSVRISDEQINDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.5e-2269.57Show/hide
Query:  MSGRSRSRQSSSV-RISDEQINDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLAT--SDTAQAAIIRSLL
        MS R RSRQSSS  RISD Q+ DLV KL+Q+LPEI + R SDK SA+KVLQETCNYIRNL+REVD+LSERLS+LL +   D+ +AA+IRSLL
Subjt:  MSGRSRSRQSSSV-RISDEQINDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLAT--SDTAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGTAGATCTCGTTCAAGACAATCAAGTAGTGTAAGAATCAGTGACGAACAAATCAATGATCTTGTTCACAAATTGCAGCAACTCCTGCCTGAGATTCGTAATCG
TCACTCAGACAAGGTTTCAGCAGCAAAGGTCTTGCAAGAGACATGCAATTACATTAGAAACTTACATAGAGAAGTGGATGATCTAAGTGAAAGACTGTCGGAGTTGTTGG
CCACATCGGACACAGCTCAAGCCGCCATTATTAGAAGCTTGCTCACTCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGTAGATCTCGTTCAAGACAATCAAGTAGTGTAAGAATCAGTGACGAACAAATCAATGATCTTGTTCACAAATTGCAGCAACTCCTGCCTGAGATTCGTAATCG
TCACTCAGACAAGGTTTCAGCAGCAAAGGTCTTGCAAGAGACATGCAATTACATTAGAAACTTACATAGAGAAGTGGATGATCTAAGTGAAAGACTGTCGGAGTTGTTGG
CCACATCGGACACAGCTCAAGCCGCCATTATTAGAAGCTTGCTCACTCAGTGA
Protein sequenceShow/hide protein sequence
MSGRSRSRQSSSVRISDEQINDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ