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Chy12G219680 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy12G219680
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionERAD-associated E3 ubiquitin-protein ligase HRD1-like
Genome locationchrH12:17893801..17895473
RNA-Seq ExpressionChy12G219680
SyntenyChy12G219680
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0043229 - intracellular organelle (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN64205.1 hypothetical protein Csa_014029 [Cucumis sativus]4.53e-11287.63Show/hide
Query:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAA----NSASSTQQNA
        METQQR TL+NNT+RKIE RG+NRLLEEE +DEI+SFASDFPSHED+AVDLLLDFITNEHTSNGALAIDMNLVHWAIN LRAADA     NS SSTQQNA
Subjt:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAA----NSASSTQQNA

Query:  YLESDILETREGIVDVTDSNDLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP
        YLESDILETREG+VDVTDSNDLLDADDEEMWMA+VRQLSLNDLSLHEGFPFRASKS IQALPDV T +DFSSSW CGVCL DEIEANDGAKQLP
Subjt:  YLESDILETREGIVDVTDSNDLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP

QHO43398.1 DNA polymerase epsilon subunit [Arachis hypogaea]1.13e-0446.51Show/hide
Query:  ATLRNNTKRKIESRGINRLLEEETIDEILSFASDFP-SHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASS
        A+ R   +RK + RG  R+L+ E +DEILSF S F  S EDEA+DLLLD +  E  S  +  I+   VH  ++RL  ADAA   SS
Subjt:  ATLRNNTKRKIESRGINRLLEEETIDEILSFASDFP-SHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASS

TYJ99062.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]6.84e-5561.46Show/hide
Query:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNAYLES
        ME QQ  TLR NTKRKIESRG+NRLLEEE +DEILSFASDFPSHEDEAVDLLLD                                        +A  ES
Subjt:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNAYLES

Query:  DILETREGIVDVTDSN--DLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP
        DILETRE IVD+TDSN  DLLD DD ++WM +VRQLSL+DL  H  FPF ASKSAIQALPDV  T+DFSSSWAC VC++DEI+A DGAKQLP
Subjt:  DILETREGIVDVTDSN--DLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP

XP_008446033.1 PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo]3.81e-8273.96Show/hide
Query:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNAYLES
        ME QQ  TLR NTKRKIESRG+NRLLEEE +DEILSFASDFPSHEDEAVDLLLD IT E TSN A  IDM+LVHWA+  LRAA+   SA ST Q+A  ES
Subjt:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNAYLES

Query:  DILETREGIVDVTDSN--DLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP
        DILETRE IVD+TDSN  DLLD DD ++WM +VRQLSL+DL  H  FPF ASKSAIQALPDV  T+DFSSSWAC VC++DEI+A DGAKQLP
Subjt:  DILETREGIVDVTDSN--DLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP

XP_025701412.1 DNA polymerase epsilon subunit B [Arachis hypogaea]1.15e-0446.51Show/hide
Query:  ATLRNNTKRKIESRGINRLLEEETIDEILSFASDFP-SHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASS
        A+ R   +RK + RG  R+L+ E +DEILSF S F  S EDEA+DLLLD +  E  S  +  I+   VH  ++RL  ADAA   SS
Subjt:  ATLRNNTKRKIESRGINRLLEEETIDEILSFASDFP-SHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASS

TrEMBL top hitse value%identityAlignment
A0A0A0LQL0 RING-type domain-containing protein4.2e-8887.63Show/hide
Query:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADA----ANSASSTQQNA
        METQQR TL+NNT+RKIE RG+NRLLEEE +DEI+SFASDFPSHED+AVDLLLDFITNEHTSNGALAIDMNLVHWAIN LRAADA     NS SSTQQNA
Subjt:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADA----ANSASSTQQNA

Query:  YLESDILETREGIVDVTDSNDLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP
        YLESDILETREG+VDVTDSNDLLDADDEEMWMA+VRQLSLNDLSLHEGFPFRASKS IQALPDV T +DFSSSW CGVCL DEIEANDGAKQLP
Subjt:  YLESDILETREGIVDVTDSNDLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP

A0A1S3BES6 ERAD-associated E3 ubiquitin-protein ligase HRD1-like3.0e-6573.96Show/hide
Query:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNAYLES
        ME QQ  TLR NTKRKIESRG+NRLLEEE +DEILSFASDFPSHEDEAVDLLLD IT E TSN A  IDM+LVHWA+  LRAA+   SA ST Q+A  ES
Subjt:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNAYLES

Query:  DILETREGIVDVTDSN--DLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP
        DILETRE IVD+TDSN  DLLD DD ++WM +VRQLSL+DL  H  FPF ASKSAIQALPDV  T+DFSSSWAC VC++DEI+A DGAKQLP
Subjt:  DILETREGIVDVTDSN--DLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP

A0A5D3BH26 Pentatricopeptide repeat-containing protein2.5e-4861.46Show/hide
Query:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNAYLES
        ME QQ  TLR NTKRKIESRG+NRLLEEE +DEILSFASDFPSHEDEAVDLLLD                                        +A  ES
Subjt:  METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNAYLES

Query:  DILETREGIVDVTDSN--DLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP
        DILETRE IVD+TDSN  DLLD DD ++WM +VRQLSL+DL  H  FPF ASKSAIQALPDV  T+DFSSSWAC VC++DEI+A DGAKQLP
Subjt:  DILETREGIVDVTDSN--DLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLP

A0A6P4DE83 DNA polymerase epsilon subunit1.7e-0446.51Show/hide
Query:  ATLRNNTKRKIESRGINRLLEEETIDEILSFASDFP-SHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASS
        A+ R   +RK + RG  R+L+ E +DEILSF S F  S EDEA+DLLLD +  E  S  +  I+   VH  ++RL  ADAA   SS
Subjt:  ATLRNNTKRKIESRGINRLLEEETIDEILSFASDFP-SHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASS

SwissProt top hitse value%identityAlignment
Q500V9 DNA polymerase epsilon subunit B4.8e-0437.5Show/hide
Query:  RNNTKRKIESRGINRLLEEETIDEILSFASDFPSHED-EAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNA
        R   ++K ++RG N  L+ + +DEIL FA  FP  +D EA+DLLLD +   H S+    +D   V   INRL  A  A    +T  ++
Subjt:  RNNTKRKIESRGINRLLEEETIDEILSFASDFPSHED-EAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNA

Arabidopsis top hitse value%identityAlignment
AT5G22110.1 DNA polymerase epsilon subunit B23.4e-0537.5Show/hide
Query:  RNNTKRKIESRGINRLLEEETIDEILSFASDFPSHED-EAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNA
        R   ++K ++RG N  L+ + +DEIL FA  FP  +D EA+DLLLD +   H S+    +D   V   INRL  A  A    +T  ++
Subjt:  RNNTKRKIESRGINRLLEEETIDEILSFASDFPSHED-EAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACACAGCAAAGAGCAACGTTGAGAAACAACACAAAGAGGAAAATAGAGAGCAGAGGAATTAACAGATTATTGGAAGAAGAAACAATTGATGAGATTCTTTCATT
TGCCTCCGACTTCCCTTCCCATGAGGATGAAGCCGTAGATCTTCTCCTCGATTTCATCACAAACGAGCATACATCAAATGGAGCTCTAGCAATAGATATGAATTTAGTTC
ATTGGGCAATTAACCGTTTACGTGCTGCCGATGCTGCCAATAGTGCCAGTTCAACACAACAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTATAGTA
GACGTTACTGATTCTAATGACTTATTGGACGCTGACGATGAAGAGATGTGGATGGCGAACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTCCCGTT
CCGGGCTTCAAAATCGGCGATTCAGGCACTACCAGATGTTTGTACTACGGAGGACTTTTCTTCTTCTTGGGCGTGTGGTGTGTGTTTGGAGGACGAGATTGAGGCAAATG
ATGGGGCCAAACAGCTGCCCT
mRNA sequenceShow/hide mRNA sequence
ATGGAAACACAGCAAAGAGCAACGTTGAGAAACAACACAAAGAGGAAAATAGAGAGCAGAGGAATTAACAGATTATTGGAAGAAGAAACAATTGATGAGATTCTTTCATT
TGCCTCCGACTTCCCTTCCCATGAGGATGAAGCCGTAGATCTTCTCCTCGATTTCATCACAAACGAGCATACATCAAATGGAGCTCTAGCAATAGATATGAATTTAGTTC
ATTGGGCAATTAACCGTTTACGTGCTGCCGATGCTGCCAATAGTGCCAGTTCAACACAACAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTATAGTA
GACGTTACTGATTCTAATGACTTATTGGACGCTGACGATGAAGAGATGTGGATGGCGAACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTCCCGTT
CCGGGCTTCAAAATCGGCGATTCAGGCACTACCAGATGTTTGTACTACGGAGGACTTTTCTTCTTCTTGGGCGTGTGGTGTGTGTTTGGAGGACGAGATTGAGGCAAATG
ATGGGGCCAAACAGCTGCCCT
Protein sequenceShow/hide protein sequence
METQQRATLRNNTKRKIESRGINRLLEEETIDEILSFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRAADAANSASSTQQNAYLESDILETREGIV
DVTDSNDLLDADDEEMWMANVRQLSLNDLSLHEGFPFRASKSAIQALPDVCTTEDFSSSWACGVCLEDEIEANDGAKQLPX