; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy1G006080 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy1G006080
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Genome locationchrH01:4353566..4366849
RNA-Seq ExpressionChy1G006080
SyntenyChy1G006080
Gene Ontology termsGO:0009791 - post-embryonic development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR003656 - Zinc finger, BED-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035272.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]1.49e-2084.31Show/hide
Query:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLT
        MVWDHFE  KGDPNDP AKCKYCGVVYACHSKRNGTGTMKHHL+N K  L+
Subjt:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLT

KAA0052298.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]3.72e-1885.11Show/hide
Query:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYK
        MVWDHFE  KGDPNDP AKCKYCGVVYACHSKRNGTGT+K+HL+N K
Subjt:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYK

KAA0066711.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]1.04e-1831.51Show/hide
Query:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLTK*KENKPK*HYLSNLKTKLG---------KFWLK****MNCSLSLWRTR
        MVWDHFE  KGDPNDP AKCKYCGVVYACHSKRNGTGTMKHHL+N K    + K ++ +       K K+G          F L       C  +L    
Subjt:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLTK*KENKPK*HYLSNLKTKLG---------KFWLK****MNCSLSLWRTR

Query:  VGMANNMKAKFEKYWGNNKKNNLLLLC----WILEKN*DLLLNP*EMWTKME*YN*YTYCFRLILNFIQMKMWVKILSMTQ*LRNLEVMSLLQLSNKGHR
        + + + +  KF    G  K  + L       +++     +  +  + +  +E +   T    +  N   +K W     ++  +   E  +          
Subjt:  VGMANNMKAKFEKYWGNNKKNNLLLLC----WILEKN*DLLLNP*EMWTKME*YN*YTYCFRLILNFIQMKMWVKILSMTQ*LRNLEVMSLLQLSNKGHR

Query:  ILISIC*-NPIILGPKVILTYYSCER*IVIDLRLLVVWLEIFWLFKFLL*RLS*LLVLRTCC*FITVFIGS*NNGGFEALTCSQNWLNFDPIDLQVQHKL
        I I +   N +  G   IL ++        D R  V+      +   L+  ++      T    + +   S      EAL C+QNWLN DPI LQVQH+L
Subjt:  ILISIC*-NPIILGPKVILTYYSCER*IVIDLRLLVVWLEIFWLFKFLL*RLS*LLVLRTCC*FITVFIGS*NNGGFEALTCSQNWLNFDPIDLQVQHKL

Query:  E*ASKFEASCR
        E ASKFE   R
Subjt:  E*ASKFEASCR

TYK27122.1 transposase [Cucumis melo var. makuwa]5.99e-2331.79Show/hide
Query:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLTK*KENKPK*HYLSNLKTKLGKFWLK****MNC-SLSLWRTRVG-----M
        MVW+HFE  K DPNDP AKCKYCGVVYACHSKRNGTGTMKHHL+N K    + K N+ +       K K+G    +    + C S SL   R       +
Subjt:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLTK*KENKPK*HYLSNLKTKLGKFWLK****MNC-SLSLWRTRVG-----M

Query:  ANNMKAKF----------EKYWGNN----KKNNLLLLCWILEKN*------DLLLNP*EMWTKME*YN*YTYCFRLILNFIQMKMWVKILSMTQ*LRNLE
         + +  KF          E++ G+     ++ +  +  ++LE N       D+LL     W KM      +  F ++ +  +  + + + +         
Subjt:  ANNMKAKF----------EKYWGNN----KKNNLLLLCWILEKN*------DLLLNP*EMWTKME*YN*YTYCFRLILNFIQMKMWVKILSMTQ*LRNLE

Query:  VMSLLQLSNKGHRILISIC*NPIILGPKVILTY-YSCER*IVIDLRLLVVWLEIFWLFKFLL*RLS*LLVLRTCC*FITVFIGS*NNGGFEALTCSQNWL
        V+S    S  G  +  S C    +L PK +  + +S  R +V   R                            C        S  +   EAL C+QNWL
Subjt:  VMSLLQLSNKGHRILISIC*NPIILGPKVILTY-YSCER*IVIDLRLLVVWLEIFWLFKFLL*RLS*LLVLRTCC*FITVFIGS*NNGGFEALTCSQNWL

Query:  NFDPIDLQVQHKLE*ASKFEASCR
        N+DPI LQ+QH+LE ASKFE   R
Subjt:  NFDPIDLQVQHKLE*ASKFEASCR

TYK27859.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]1.04e-1831.51Show/hide
Query:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLTK*KENKPK*HYLSNLKTKLG---------KFWLK****MNCSLSLWRTR
        MVWDHFE  KGDPNDP AKCKYCGVVYACHSKRNGTGTMKHHL+N K    + K ++ +       K K+G          F L       C  +L    
Subjt:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLTK*KENKPK*HYLSNLKTKLG---------KFWLK****MNCSLSLWRTR

Query:  VGMANNMKAKFEKYWGNNKKNNLLLLC----WILEKN*DLLLNP*EMWTKME*YN*YTYCFRLILNFIQMKMWVKILSMTQ*LRNLEVMSLLQLSNKGHR
        + + + +  KF    G  K  + L       +++     +  +  + +  +E +   T    +  N   +K W     ++  +   E  +          
Subjt:  VGMANNMKAKFEKYWGNNKKNNLLLLC----WILEKN*DLLLNP*EMWTKME*YN*YTYCFRLILNFIQMKMWVKILSMTQ*LRNLEVMSLLQLSNKGHR

Query:  ILISIC*-NPIILGPKVILTYYSCER*IVIDLRLLVVWLEIFWLFKFLL*RLS*LLVLRTCC*FITVFIGS*NNGGFEALTCSQNWLNFDPIDLQVQHKL
        I I +   N +  G   IL ++        D R  V+      +   L+  ++      T    + +   S      EAL C+QNWLN DPI LQVQH+L
Subjt:  ILISIC*-NPIILGPKVILTYYSCER*IVIDLRLLVVWLEIFWLFKFLL*RLS*LLVLRTCC*FITVFIGS*NNGGFEALTCSQNWLNFDPIDLQVQHKL

Query:  E*ASKFEASCR
        E ASKFE   R
Subjt:  E*ASKFEASCR

TrEMBL top hitse value%identityAlignment
A0A5A7SRK8 Zinc finger BED domain-containing protein RICESLEEPER 3-like8.6e-0470.59Show/hide
Query:  EALTCSQNWLNFDPIDLQVQHKLE*ASKFEASCR
        EAL C+QNWLN DPI LQ QH+LE ASKFE   R
Subjt:  EALTCSQNWLNFDPIDLQVQHKLE*ASKFEASCR

A0A5A7SRK8 Zinc finger BED domain-containing protein RICESLEEPER 3-like3.4e-1689.36Show/hide
Query:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYK
        MVWDHFE  KGDPNDP AKCKYCGVVYACHSKRNGTGTMKHHL+N K
Subjt:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYK

A0A5A7SVK2 Zinc finger BED domain-containing protein RICESLEEPER 3-like1.2e-1684.31Show/hide
Query:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLT
        MVWDHFE  KGDPNDP AKCKYCGVVYACHSKRNGTGTMKHHL+N K  L+
Subjt:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLT

A0A5D3CEC4 Zinc finger BED domain-containing protein RICESLEEPER 3-like3.4e-1689.36Show/hide
Query:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYK
        MVWDHFE  KGDPNDP AKCKYCGVVYACHSKRNGTGTMKHHL+N K
Subjt:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYK

A0A5D3CEC4 Zinc finger BED domain-containing protein RICESLEEPER 3-like8.6e-0470.59Show/hide
Query:  EALTCSQNWLNFDPIDLQVQHKLE*ASKFEASCR
        EAL C+QNWLN DPI LQ QH+LE ASKFE   R
Subjt:  EALTCSQNWLNFDPIDLQVQHKLE*ASKFEASCR

A0A5D3CEC4 Zinc finger BED domain-containing protein RICESLEEPER 3-like1.9e-0361.54Show/hide
Query:  MNCSLSLWRTRVGMANNMKAKFEKYWGNNKKNNLLLLCW
        +N   S     VGMANNMKAKFEKYWGNN+KN LL   +
Subjt:  MNCSLSLWRTRVGMANNMKAKFEKYWGNNKKNNLLLLCW

A0A5D3CEC4 Zinc finger BED domain-containing protein RICESLEEPER 3-like3.4e-1689.36Show/hide
Query:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYK
        MVWDHFE  KGDPNDP AKCKYCGVVYACHSKRNGTGTMKHHL+N K
Subjt:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYK

A0A5D3CR68 Zinc finger BED domain-containing protein RICESLEEPER 3-like5.1e-0496Show/hide
Query:  VGMANNMKAKFEKYWGNNKKNNLLL
        VGMANNMKAKFEKYWGNN+KNNLLL
Subjt:  VGMANNMKAKFEKYWGNNKKNNLLL

A0A5D3DUE1 Transposase1.2e-1830.84Show/hide
Query:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLTK*KENKPK*HYLSNLKTKLGKFWLK****MNC-SLSLWRTRVG-----M
        MVW+HFE  K DPNDP AKCKYCGVVYACHSKRNGTGTMKHHL+N K    + K N+ +       K K+G    +    + C S SL   R       +
Subjt:  MVWDHFES-KGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLTK*KENKPK*HYLSNLKTKLGKFWLK****MNC-SLSLWRTRVG-----M

Query:  ANNMKAKF----------EKYWGNN----KKNNLLLLCWILEKN*DLLLNP*EMWTKME*YN*YTYCFRLILNFIQMKMWVKILS-MTQ*LRNLEVMSLL
         + +  KF          E++ G+     ++ +  +  ++LE N         + T+ +        F ++L +       ++L  M + +  + V +++
Subjt:  ANNMKAKF----------EKYWGNN----KKNNLLLLCWILEKN*DLLLNP*EMWTKME*YN*YTYCFRLILNFIQMKMWVKILS-MTQ*LRNLEVMSLL

Query:  QLS--NKGHRILISIC*NPIILGPKVILTY-YSCER*IVIDLRLLVVWLEIFWLFKFLL*RLS*LLVLRTCC*FITVFIGS*NNGGFEALTCSQNWLNFD
          S  + G R++ S   +  +L PK +  + +S  R +V   R                                     S  +   EAL C+QNWLN+D
Subjt:  QLS--NKGHRILISIC*NPIILGPKVILTY-YSCER*IVIDLRLLVVWLEIFWLFKFLL*RLS*LLVLRTCC*FITVFIGS*NNGGFEALTCSQNWLNFD

Query:  PIDLQVQHKLE*ASKFEASCR
        PI LQ+QH+LE ASKFE   R
Subjt:  PIDLQVQHKLE*ASKFEASCR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTGGGACCACTTTGAGTCTAAAGGTGATCCTAATGACCCTTATGCTAAATGTAAATATTGTGGAGTTGTTTATGCATGTCATTCTAAACGTAATGGTACTGGAAC
TATGAAGCATCATTTGAAAAATTACAAAAGTACCCTTACCAAATAAAAAGAGAACAAACCCAAATGACATTACCTTTCAAACCTAAAAACAAAGTTGGGGAAGTTTTGGT
TGAAATGATAATAGTAGATGAATTGCTCTTTAAGTTTGTGGAGGACAAGGGTTGGAATGGCTAATAACATGAAGGCAAAATTTGAGAAATATTGGGGAAACAATAAAAAG
AATAATTTGTTGCTATTGTGTTGGATCCTCGAAAAAAATTAAGATTTGTTGCTGAATCCATAAGAAATGTGGACCAAGATGGAGTAGTACAACTAGTACACATACTGTTT
CAGGCTAATATTGAATTTTATTCAAATGAAAATGTGGGTGAAGATTTTGTCTATGACACAATGATTGAGGAATTTGGAGGTGATGTCTCTACTACAGCTTTCGAACAAAG
GTCATCGGATATTGATATCTATTTGTTGAAACCCAATTATTTTAGGACCGAAGGTGATTTTGACATACTACAGTTGTGAAAGATGAATCGTGATCGATTTGAGGTTATTG
GTCGTATGGCTAGAGATATTTTGGCTATTCAAGTTTTTACTGTAGCGCCTGAGTTGACTTTTAGTACTGAGGACGTGTTGTTGATTCATCACGGTGTTCATTGGCTCCTA
AAACAATGGAGGTTTTGAAGCTTTGACATGTTCTCAAAATTGGCTAAATTTTGATCCAATAGATCTTCAAGTTCAACATAAATTGGAATAGGCTTCAAAATTTGAAGCAT
CGTGTCGTAGACAAAATCTTCACCCACATTTTCATTTGAATCAAATTCAATATTAACATCCAAGACCATGTAATTTATATTTTGTTATGATGGTGCTTTTTGTTTCTGAA
TATGGT
mRNA sequenceShow/hide mRNA sequence
ATGGTTTGGGACCACTTTGAGTCTAAAGGTGATCCTAATGACCCTTATGCTAAATGTAAATATTGTGGAGTTGTTTATGCATGTCATTCTAAACGTAATGGTACTGGAAC
TATGAAGCATCATTTGAAAAATTACAAAAGTACCCTTACCAAATAAAAAGAGAACAAACCCAAATGACATTACCTTTCAAACCTAAAAACAAAGTTGGGGAAGTTTTGGT
TGAAATGATAATAGTAGATGAATTGCTCTTTAAGTTTGTGGAGGACAAGGGTTGGAATGGCTAATAACATGAAGGCAAAATTTGAGAAATATTGGGGAAACAATAAAAAG
AATAATTTGTTGCTATTGTGTTGGATCCTCGAAAAAAATTAAGATTTGTTGCTGAATCCATAAGAAATGTGGACCAAGATGGAGTAGTACAACTAGTACACATACTGTTT
CAGGCTAATATTGAATTTTATTCAAATGAAAATGTGGGTGAAGATTTTGTCTATGACACAATGATTGAGGAATTTGGAGGTGATGTCTCTACTACAGCTTTCGAACAAAG
GTCATCGGATATTGATATCTATTTGTTGAAACCCAATTATTTTAGGACCGAAGGTGATTTTGACATACTACAGTTGTGAAAGATGAATCGTGATCGATTTGAGGTTATTG
GTCGTATGGCTAGAGATATTTTGGCTATTCAAGTTTTTACTGTAGCGCCTGAGTTGACTTTTAGTACTGAGGACGTGTTGTTGATTCATCACGGTGTTCATTGGCTCCTA
AAACAATGGAGGTTTTGAAGCTTTGACATGTTCTCAAAATTGGCTAAATTTTGATCCAATAGATCTTCAAGTTCAACATAAATTGGAATAGGCTTCAAAATTTGAAGCAT
CGTGTCGTAGACAAAATCTTCACCCACATTTTCATTTGAATCAAATTCAATATTAACATCCAAGACCATGTAATTTATATTTTGTTATGATGGTGCTTTTTGTTTCTGAA
TATGGT
Protein sequenceShow/hide protein sequence
MVWDHFESKGDPNDPYAKCKYCGVVYACHSKRNGTGTMKHHLKNYKSTLTKKENKPK*HYLSNLKTKLGKFWLK***MNCSLSLWRTRVGMANNMKAKFEKYWGNNKKNN
LLLLCWILEKNDLLLNP*EMWTKME*YN*YTYCFRLILNFIQMKMWVKILSMTQ*LRNLEVMSLLQLSNKGHRILISICNPIILGPKVILTYYSCER*IVIDLRLLVVWL
EIFWLFKFLL*RLS*LLVLRTCCFITVFIGS*NNGGFEALTCSQNWLNFDPIDLQVQHKLE*ASKFEASCRRQNLHPHFHLNQIQYHPRPCNLYFVMMVLFVSEYG