; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy1G007780 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy1G007780
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionprotein RADIALIS-like 1
Genome locationchrH01:6051457..6051986
RNA-Seq ExpressionChy1G007780
SyntenyChy1G007780
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.74e-5097.53Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ

KAE8645641.1 hypothetical protein Csa_020418 [Cucumis sativus]1.47e-5194.19Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQDKHEI
        MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ++  I
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQDKHEI

XP_004151125.2 protein RADIALIS-like 1 [Cucumis sativus]1.99e-5198.77Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ
        MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ

XP_008447024.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]1.64e-5097.53Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ

XP_038888369.1 protein RADIALIS-like 1 [Benincasa hispida]8.32e-4691.25Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGN
        MASMSSHGSG+WT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVK HYALLVEDVKFIESGQVPFPYR+S  GN
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGN

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein3.2e-3898.77Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ
        MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ

A0A1S3BFW6 protein RADIALIS-like 11.6e-3797.53Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ

A0A5A7SYK4 Protein RADIALIS-like 11.6e-3797.53Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ

A0A6J1C385 protein RADIALIS-like 11.2e-3288.75Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGN
        MASMSSHGS  WT  QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSG G+
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGN

A0A6J1GJE9 protein RADIALIS-like 14.0e-3390.24Show/hide
Query:  MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ
        MASMSSHGS GTWTV QNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVEDVKFIESGQVPFPYRTSG G Q
Subjt:  MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.2e-2674.03Show/hide
Query:  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG
        +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VPFP YRTSG
Subjt:  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG

Q1A173 Protein RADIALIS-like 61.8e-2264.63Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGNQ
        MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T  S ++
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGNQ

Q58FS3 Transcription factor RADIALIS2.5e-2466.27Show/hide
Query:  SSHGSG-TWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGNQDKHE
        S+ GSG  W+  +NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+IESG+VPFP YRT+G GN    E
Subjt:  SSHGSG-TWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGNQDKHE

Q6NNN0 Protein RADIALIS-like 31.4e-2262.96Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGN
        MAS S   S +WT  +NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ DV  IESG+ P P YR++G+ +
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGN

Q9SIJ5 Protein RADIALIS-like 29.3e-2769.14Show/hide
Query:  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQDK
        SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VPFP   + +GN ++
Subjt:  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQDK

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.8e-2361.9Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGNQDK
        MAS S   S +WT  QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE   VP P Y+T   G++ +
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGNQDK

AT1G75250.1 RAD-like 61.3e-2364.63Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGNQ
        MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T  S ++
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGNQ

AT1G75250.2 RAD-like 61.3e-2364.63Show/hide
Query:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGNQ
        MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T  S ++
Subjt:  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGSGNQ

AT2G21650.1 Homeodomain-like superfamily protein6.6e-2869.14Show/hide
Query:  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQDK
        SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VPFP   + +GN ++
Subjt:  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQDK

AT4G39250.1 RAD-like 18.6e-2874.03Show/hide
Query:  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG
        +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VPFP YRTSG
Subjt:  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGATGTCTTCCCATGGATCTGGTACGTGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAA
TGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATC
GAACCTCCGGAAGTGGTAACCAAGATAAACACGAGATTCTACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGATGTCTTCCCATGGATCTGGTACGTGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAA
TGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATC
GAACCTCCGGAAGTGGTAACCAAGATAAACACGAGATTCTACCTTAA
Protein sequenceShow/hide protein sequence
MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGSGNQDKHEILP