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Chy1G007790 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy1G007790
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionProtein RADIALIS-like 1
Genome locationchrH01:6072614..6072853
RNA-Seq ExpressionChy1G007790
SyntenyChy1G007790
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036170.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.47e-5097.47Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN
        MAS+SAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYR+SRGN
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN

XP_004151116.1 protein RADIALIS-like 1 [Cucumis sativus]2.08e-5098.73Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN
        MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSR N
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]5.98e-5096.2Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN
        MAS+SAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYR+SRGN
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN

XP_022952073.1 protein RADIALIS-like 1 [Cucurbita moschata]8.19e-4892.41Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN
        MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYRSSRG+
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN

XP_038888369.1 protein RADIALIS-like 1 [Benincasa hispida]1.52e-4183.33Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRG
        MAS+S+HGSG WTAKQNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVK HY LL+EDVK IESG+VPFPYRSSRG
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRG

TrEMBL top hitse value%identityAlignment
A0A0A0K344 SANT domain-containing protein3.2e-3798.73Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN
        MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSR N
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN

A0A1S3BGF6 protein RADIALIS-like 17.1e-3796.2Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN
        MAS+SAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYR+SRGN
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN

A0A5A7SYM4 Protein RADIALIS-like 12.4e-3797.47Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN
        MAS+SAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYR+SRGN
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN

A0A6J1GJG0 protein RADIALIS-like 13.0e-3592.41Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN
        MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYRSSRG+
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN

A0A6J1IA78 protein RADIALIS-like 13.0e-3592.41Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN
        MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYRSSRG+
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.1e-2567.95Show/hide
Query:  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRG
        +S+S+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+  IE+G VPFP YR+S G
Subjt:  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRG

Q1A173 Protein RADIALIS-like 66.2e-2262.5Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN
        MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G+VP P Y++   N
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN

Q58FS3 Transcription factor RADIALIS3.5e-2568.83Show/hide
Query:  SAHGSG-VWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN
        S  GSG  W+AK+NKAFE ALA+YDKDTPDRW NVA+A+ G+T EEVK+HY++L+ED+K+IESGKVPFP YR++ GN
Subjt:  SAHGSG-VWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN

Q6NNN0 Protein RADIALIS-like 32.1e-2262.03Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN
        MAS S   S  WT K+NK FE ALA YD+DTPDRW NVA+A+GGK+ EEV+RHY+LL+ DV  IESG+ P P   S GN
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN

Q9SIJ5 Protein RADIALIS-like 27.8e-2565.38Show/hide
Query:  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN
        S+S++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++ IE+G VPFP Y+++ GN
Subjt:  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.2e-2265.28Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP
        MAS S   S  WT+KQNK FE ALA+YDKDTPDRW NVAKA+G K+ EEVKRHY +L+ED+ +IE   VP P
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP

AT1G75250.1 RAD-like 64.4e-2362.5Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN
        MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G+VP P Y++   N
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN

AT1G75250.2 RAD-like 64.4e-2362.5Show/hide
Query:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN
        MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G+VP P Y++   N
Subjt:  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN

AT2G21650.1 Homeodomain-like superfamily protein5.6e-2665.38Show/hide
Query:  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN
        S+S++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++ IE+G VPFP Y+++ GN
Subjt:  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRGN

AT4G39250.1 RAD-like 11.5e-2667.95Show/hide
Query:  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRG
        +S+S+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+  IE+G VPFP YR+S G
Subjt:  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRSSRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCATTGTCAGCTCATGGTTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAAGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAA
TGTTGCAAAAGCCATTGGTGGGAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTCTAGAGGATGTTAAGCATATTGAGTCGGGCAAAGTTCCTTTTCCTTACA
GAAGCTCAAGAGGCAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCATTGTCAGCTCATGGTTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAAGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAA
TGTTGCAAAAGCCATTGGTGGGAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTCTAGAGGATGTTAAGCATATTGAGTCGGGCAAAGTTCCTTTTCCTTACA
GAAGCTCAAGAGGCAATTAA
Protein sequenceShow/hide protein sequence
MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRGN