CuGenDBv2

Gene ID	Chy1G010200
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Ribosomal protein S12
Genome location	chrH01:10766479..10766769
RNA-Seq Expression	Chy1G010200
Synteny	Chy1G010200
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022900 - electron transport chain (biological process) GO:0015935 - small ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0031966 - mitochondrial membrane (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function)
InterPro domains	IPR006032 - Ribosomal protein S12/S23 IPR012340 - Nucleic acid-binding, OB-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AEN56124.1 ribosomal protein S12 [Cucumis melo subsp. melo]

9.73e-33

85.71

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        MPT NQ I HGREEK+RTDRTRASDQCPQKQGVR  LATRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

KAA0065512.1 ribosomal protein S12C [Cucumis melo var. makuwa]

2.64e-36

84.34

Show/hide

Query:  GVLRSGVITSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        G   SGVITSERAMPT NQ I HGREEK+RTDRTRASDQCPQKQGVR  LATRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  GVLRSGVITSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

KAG4934588.1 hypothetical protein JHK85_049507 [Glycine max]

1.86e-34

Show/hide

Query:  TSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        T ERAMPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  ++TRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  TSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

XP_023545340.1 uncharacterized protein LOC111804778 [Cucurbita pepo subsp. pepo]

6.85e-33

85.71

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  L+TRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

YP_004849331.1 ribosomal protein S12 [Cucumis sativus]

2.40e-33

87.14

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  LATRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

TrEMBL top hits

e value

%identity

Alignment

A0A072TTI0 NADH dehydrogenase subunit 3

2.6e-25

78.75

Show/hide

Query:  RSGVITSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        R G  T ERAMPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  +  RTPKK NS  RKIAKV LSNR DIFAHIPGE
Subjt:  RSGVITSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

A0A251RWN6 NADH dehydrogenase subunit 3

6.8e-26

71.28

Show/hide

Query:  GVLRSGVITSER-----------AMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        G   SGV TS+R           AMPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  + TRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  GVLRSGVITSER-----------AMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

A0A2J6JZN3 NADH dehydrogenase subunit 3

3.4e-25

83.56

Show/hide

Query:  ERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        ER MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  + TRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  ERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

A0A5A7VB34 NADH dehydrogenase subunit 3

7.8e-30

84.34

Show/hide

Query:  GVLRSGVITSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        G   SGVITSERAMPT NQ I HGREEK+RTDRTRASDQCPQKQGVR  LATRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  GVLRSGVITSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

G3EIY3 Ribosomal protein S12

4.4e-25

87.14

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  LATRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

SwissProt top hits

e value

%identity

Alignment

P27070 Ribosomal protein S12, mitochondrial

8.6e-26

81.43

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  + TRTPKK NS PRKIAKV L+NR DIF HIPGE
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

P28520 Ribosomal protein S12, mitochondrial

1.9e-25

82.86

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        MPT NQ I HGREEKQRTDRTRASDQCPQKQGV L ++TRTPKK NS  RKIAKV LSNR DIFAHIPGE
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

P60096 Ribosomal protein S12, mitochondrial

1.0e-26

84.29

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  + TRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

P60097 Ribosomal protein S12, mitochondrial

1.0e-26

84.29

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  + TRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

P68535 Ribosomal protein S12, mitochondrial

7.3e-25

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        MP+LNQ I HGREEK+RTDRTRA DQCPQKQGV   ++TRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

Arabidopsis top hits

e value

%identity

Alignment

AT2G07675.1 Ribosomal protein S12/S23 family protein

7.5e-25

77.14

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        MPT NQ I HGREEK+RTDRTRA D+CPQK GV   ++TRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

ATCG00065.1 ribosomal protein S12A

1.1e-07

40.58

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPG
        MPT+ Q I + R+  +   ++ A   CPQ++G    + T TPKK NS  RK+A+V L++  +I A+IPG
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPG

ATCG00905.1 ribosomal protein S12C

1.1e-07

40.58

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPG
        MPT+ Q I + R+  +   ++ A   CPQ++G    + T TPKK NS  RK+A+V L++  +I A+IPG
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPG

ATCG01230.1 ribosomal protein S12B

1.1e-07

40.58

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPG
        MPT+ Q I + R+  +   ++ A   CPQ++G    + T TPKK NS  RK+A+V L++  +I A+IPG
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPG

ATMG00980.1 Ribosomal protein S12/S23 family protein

7.5e-25

77.14

Show/hide

Query:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE
        MPT NQ I HGREEK+RTDRTRA D+CPQK GV   ++TRTPKK NS PRKIAKV LSNR DIFAHIPGE
Subjt:  MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATGGAAAAGGGGTGCTTCGATCGGGAGTAATCACTAGTGAGAGGGCGATGCCTACATTAAATCAATTTATTCATCATGGTAGAGAAGAAAAACAGCGAACG
GACCGTACTCGAGCTTCAGATCAATGTCCCCAGAAGCAAGGAGTACGCCTGCATCTTGCAACGAGAACACCGAAAAAAGCTAATTCACCTCCACGTAAGATAGCC
AAAGTATGGTTGAGCAATCGACAAGATATATTTGCTCACATTCCGGGTGAAGATATATTTGCTCACATTCTATGGTCTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNGKGVLRSGVITSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGEDIFAHILWS

Chy1G010200 (gene) of Cucumber (hystrix) v1 genome