; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy1G010280 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy1G010280
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionReverse transcriptase
Genome locationchrH01:10909110..10920289
RNA-Seq ExpressionChy1G010280
SyntenyChy1G010280
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]6.21e-1373.81Show/hide
Query:  VHTG*ILLLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTS
        V+TG + LLTL+VLR+NDA+VSAG  PLRQR+WECWA PTTS
Subjt:  VHTG*ILLLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTS

KAA0035073.1 uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa]2.22e-0832.61Show/hide
Query:  MKKA*ANSDVHW-VNFDKENRAGGFLTKS----GDLWFFWAS*RGRCTRYCWSGSVSRAT*YYTQGIRFTCLEIRFRGLQIHD*GVEPKAIWYLVHTG*I
        +K+    S+  W + F +     GF   S    G     W   +  C R   SGSV R    Y +GIRF CL+I                          
Subjt:  MKKA*ANSDVHW-VNFDKENRAGGFLTKS----GDLWFFWAS*RGRCTRYCWSGSVSRAT*YYTQGIRFTCLEIRFRGLQIHD*GVEPKAIWYLVHTG*I

Query:  LLLTLSVLRNNDAVVSAGLA------PLRQRRWECWAGPTTSCLQAYSSNQLASLSR*RFQQSRQIQIEKSIVCRLHAVFRSKL
         LLTLSVLRNNDAVV            LR+  +     P +  L   S N           +SRQIQ++KS+V RLHA+FRSK+
Subjt:  LLLTLSVLRNNDAVVSAGLA------PLRQRRWECWAGPTTSCLQAYSSNQLASLSR*RFQQSRQIQIEKSIVCRLHAVFRSKL

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]4.03e-0882.86Show/hide
Query:  LLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTS
        L TLSVLRNNDA VSAG  PLRQRRWEC  GPTTS
Subjt:  LLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTS

KAA0056684.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.59e-1240.43Show/hide
Query:  WAS*RGRCTRYCWSGSVSRAT*YYTQGIRFTCLEIRFRGLQIHD*GVEPKAIWYLVHTG*ILLLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTSCLQ
        W   +  C R   SGSV R    Y +GIRF CL+I                           LLTLSVLRNNDAVV     P+  R    + G    C  
Subjt:  WAS*RGRCTRYCWSGSVSRAT*YYTQGIRFTCLEIRFRGLQIHD*GVEPKAIWYLVHTG*ILLLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTSCLQ

Query:  AYSS--NQLASLSR*RFQQSRQIQIEKSIVCRLHAVFRSKL
         Y+S   +LAS S   F+QSRQIQ++K++V RLHA+FRSK+
Subjt:  AYSS--NQLASLSR*RFQQSRQIQIEKSIVCRLHAVFRSKL

TYK00876.1 Chromo domain-containing protein [Cucumis melo var. makuwa]2.48e-0846.24Show/hide
Query:  EPKAIWYLVHTG*ILLLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTSCLQAYSSNQLAS-LSR*RFQQSRQIQIEKSIVCRLHAVFRSKL
         P+A  Y V+TG + LLTLSVLR+N+A+VSAG                  CLQ Y  NQL S  +   F  S    +EK +V RLHAVFRSKL
Subjt:  EPKAIWYLVHTG*ILLLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTSCLQAYSSNQLAS-LSR*RFQQSRQIQIEKSIVCRLHAVFRSKL

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein8.0e-0973.81Show/hide
Query:  VHTG*ILLLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTS
        V+TG + LLTL+VLR+NDA+VSAG  PLRQR+WECWA PTTS
Subjt:  VHTG*ILLLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTS

A0A5A7SX02 CCHC-type domain-containing protein1.3e-0635.86Show/hide
Query:  WAS*RGRCTRYCWSGSVSRAT*YYTQGIRFTCLEIRFRGLQIHD*GVEPKAIWYLVHTG*ILLLTLSVLRNNDAVVS------AGLAPLRQRRWECWAGP
        W   +  C R   SGSV R    Y +GIRF CL+I                           LLTLSVLRNNDAVV            LR+  +     P
Subjt:  WAS*RGRCTRYCWSGSVSRAT*YYTQGIRFTCLEIRFRGLQIHD*GVEPKAIWYLVHTG*ILLLTLSVLRNNDAVVS------AGLAPLRQRRWECWAGP

Query:  TTSCLQAYSSNQLASLSR*RFQQSRQIQIEKSIVCRLHAVFRSKL
         +  L   S N           +SRQIQ++KS+V RLHA+FRSK+
Subjt:  TTSCLQAYSSNQLASLSR*RFQQSRQIQIEKSIVCRLHAVFRSKL

A0A5A7T7M6 Reverse transcriptase2.2e-0671.43Show/hide
Query:  LLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTSCLQAYSS
        L TLSVL +NDAVVSAG APLRQRRWEC  GPTTS  + +S+
Subjt:  LLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTSCLQAYSS

A0A5A7UNA3 Reverse transcriptase4.2e-1040.43Show/hide
Query:  WAS*RGRCTRYCWSGSVSRAT*YYTQGIRFTCLEIRFRGLQIHD*GVEPKAIWYLVHTG*ILLLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTSCLQ
        W   +  C R   SGSV R    Y +GIRF CL+I                           LLTLSVLRNNDAVV     P+  R    + G    C  
Subjt:  WAS*RGRCTRYCWSGSVSRAT*YYTQGIRFTCLEIRFRGLQIHD*GVEPKAIWYLVHTG*ILLLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTSCLQ

Query:  AYSS--NQLASLSR*RFQQSRQIQIEKSIVCRLHAVFRSKL
         Y+S   +LAS S   F+QSRQIQ++K++V RLHA+FRSK+
Subjt:  AYSS--NQLASLSR*RFQQSRQIQIEKSIVCRLHAVFRSKL

A0A5D3BTP3 Reverse transcriptase2.2e-0671.43Show/hide
Query:  LLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTSCLQAYSS
        L TLSVL +NDAVVSAG APLRQRRWEC  GPTTS  + +S+
Subjt:  LLTLSVLRNNDAVVSAGLAPLRQRRWECWAGPTTSCLQAYSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAAGCTTGAGCAAATTCTGATGTTCATTGGGTGAATTTTGACAAAGAAAACAGGGCAGGTGGTTTTCTCACGAAATCAGGAGACCTCTGGTTTTTTTGGGCAAG
TTAAAGGGGTCGTTGTACACGCTATTGTTGGAGTGGTTCGGTTTCGAGGGCTACCTGATATTATACACAGGGAATCAGATTTACATGTCTTGAGATAAGATTTAGAGGAC
TTCAAATACATGACTGAGGTGTTGAGCCCAAGGCTATATGGTACCTTGTGCACACAGGTTAGATTCTGTTGTTGACGTTGAGTGTACTCCGTAACAACGATGCTGTCGTG
AGTGCTGGGCTGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTGTCTCCAGGCTTACTCGTCAAATCAATTAGCAAGTTTATCACGTTA
AAGATTTCAGCAGAGTCGACAGATACAAATAGAGAAAAGCATTGTCTGTCGACTTCACGCCGTCTTTCGATCTAAGCTATT
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAAGCTTGAGCAAATTCTGATGTTCATTGGGTGAATTTTGACAAAGAAAACAGGGCAGGTGGTTTTCTCACGAAATCAGGAGACCTCTGGTTTTTTTGGGCAAG
TTAAAGGGGTCGTTGTACACGCTATTGTTGGAGTGGTTCGGTTTCGAGGGCTACCTGATATTATACACAGGGAATCAGATTTACATGTCTTGAGATAAGATTTAGAGGAC
TTCAAATACATGACTGAGGTGTTGAGCCCAAGGCTATATGGTACCTTGTGCACACAGGTTAGATTCTGTTGTTGACGTTGAGTGTACTCCGTAACAACGATGCTGTCGTG
AGTGCTGGGCTGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTGTCTCCAGGCTTACTCGTCAAATCAATTAGCAAGTTTATCACGTTA
AAGATTTCAGCAGAGTCGACAGATACAAATAGAGAAAAGCATTGTCTGTCGACTTCACGCCGTCTTTCGATCTAAGCTATT
Protein sequenceShow/hide protein sequence
MKKAANSDVHWVNFDKENRAGGFLTKSGDLWFFWAS*RGRCTRYCWSGSVSRAT*YYTQGIRFTCLEIRFRGLQIHDGVEPKAIWYLVHTG*ILLLTLSVLRNNDAVVSA
GLAPLRQRRWECWAGPTTSCLQAYSSNQLASLSRRFQQSRQIQIEKSIVCRLHAVFRSKLX