CuGenDBv2

Gene ID	Chy1G012130
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	CDT1-like protein b
Genome location	chrH01:14395931..14405655
RNA-Seq Expression	Chy1G012130
Synteny	Chy1G012130
Gene Ontology terms	GO:0000076 - DNA replication checkpoint (biological process) GO:0000278 - mitotic cell cycle (biological process) GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process) GO:0071163 - DNA replication preinitiation complex assembly (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0070182 - DNA polymerase binding (molecular function)
InterPro domains	IPR036390 - Winged helix DNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043447.1 CDT1-like protein b [Cucumis melo var. makuwa]

6.67e-50

84.82

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Query:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS
        EKPAELSTRTRN KVALSIK +K+AA SV++SNRQLPL +  +ESKS+RRQIDL SN+SQSVDNKSKK PEKFEMLCK FYSLDSAMRLLRFKGVASNFS
Subjt:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS

Query:  NVCPKIEALTDR
        NVCPKIEALTDR
Subjt:  NVCPKIEALTDR

KAA0051017.1 CDT1-like protein b [Cucumis melo var. makuwa]

3.32e-49

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Query:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS
        EKPAELSTR+RN KVALSIK +KQAA+SV ESNRQLPLD+ T+E KS+RRQID  SN+SQSV+NKS+KLPEKFEMLCK FYSLDSAMRLLR KGVASNFS
Subjt:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS

Query:  NVCPKIEALTDRVMMFQRICCRIHSISEANMLSQ-----NPTCYGYQDIN
        NVCPK+EALTDR   +  +      + EA +L +       TC    D++
Subjt:  NVCPKIEALTDRVMMFQRICCRIHSISEANMLSQ-----NPTCYGYQDIN

XP_008455861.1 PREDICTED: CDT1-like protein b [Cucumis melo]

6.67e-50

84.82

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Query:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS
        EKPAELSTRTRN KVALSIK +K+AA SV++SNRQLPL +  +ESKS+RRQIDL SN+SQSVDNKSKK PEKFEMLCK FYSLDSAMRLLRFKGVASNFS
Subjt:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS

Query:  NVCPKIEALTDR
        NVCPKIEALTDR
Subjt:  NVCPKIEALTDR

XP_008461526.1 PREDICTED: CDT1-like protein b [Cucumis melo]

3.32e-49

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Query:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS
        EKPAELSTR+RN KVALSIK +KQAA+SV ESNRQLPLD+ T+E KS+RRQID  SN+SQSV+NKS+KLPEKFEMLCK FYSLDSAMRLLR KGVASNFS
Subjt:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS

Query:  NVCPKIEALTDRVMMFQRICCRIHSISEANMLSQ-----NPTCYGYQDIN
        NVCPK+EALTDR   +  +      + EA +L +       TC    D++
Subjt:  NVCPKIEALTDRVMMFQRICCRIHSISEANMLSQ-----NPTCYGYQDIN

XP_031744905.1 uncharacterized protein LOC105436135 isoform X6 [Cucumis sativus]

2.16e-47

79.46

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Query:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS
        EKPA+LSTRTRNCKV+LSIKAIK+A QSV ESN  LPLD+PT+ESKS+RRQIDLLSN+SQSVDNKSKKLPE          + DSAMRLLRFKGVASNFS
Subjt:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS

Query:  NVCPKIEALTDR
        NVCPKIEALTDR
Subjt:  NVCPKIEALTDR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C211 CDT1-like protein b

2.1e-42

84.82

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Query:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS
        EKPAELSTRTRN KVALSIK +K+AA SV++SNRQLPL +  +ESKS+RRQIDL SN+SQSVDNKSKK PEKFEMLCK FYSLDSAMRLLRFKGVASNFS
Subjt:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS

Query:  NVCPKIEALTDR
        NVCPKIEALTDR
Subjt:  NVCPKIEALTDR

A0A1S3CEP6 CDT1-like protein b

1.1e-41

83.04

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Query:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS
        EKPAELSTR+RN KVALSIK +KQAA+SV ESNRQLPLD+ T+E KS+RRQID  SN+SQSV+NKS+KLPEKFEMLCK FYSLDSAMRLLR KGVASNFS
Subjt:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS

Query:  NVCPKIEALTDR
        NVCPK+EALTDR
Subjt:  NVCPKIEALTDR

A0A5A7TNU2 CDT1-like protein b

2.1e-42

84.82

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Query:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS
        EKPAELSTRTRN KVALSIK +K+AA SV++SNRQLPL +  +ESKS+RRQIDL SN+SQSVDNKSKK PEKFEMLCK FYSLDSAMRLLRFKGVASNFS
Subjt:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS

Query:  NVCPKIEALTDR
        NVCPKIEALTDR
Subjt:  NVCPKIEALTDR

A0A5D3BZJ0 CDT1-like protein b

1.1e-41

83.04

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Query:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS
        EKPAELSTR+RN KVALSIK +KQAA+SV ESNRQLPLD+ T+E KS+RRQID  SN+SQSV+NKS+KLPEKFEMLCK FYSLDSAMRLLR KGVASNFS
Subjt:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS

Query:  NVCPKIEALTDR
        NVCPK+EALTDR
Subjt:  NVCPKIEALTDR

A0A5D3DKW1 CDT1-like protein b

2.1e-42

84.82

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Query:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS
        EKPAELSTRTRN KVALSIK +K+AA SV++SNRQLPL +  +ESKS+RRQIDL SN+SQSVDNKSKK PEKFEMLCK FYSLDSAMRLLRFKGVASNFS
Subjt:  EKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFS

Query:  NVCPKIEALTDR
        NVCPKIEALTDR
Subjt:  NVCPKIEALTDR

SwissProt top hits

e value

%identity

Alignment

Q9M1S9 CDT1-like protein b

2.1e-10

42.86

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Query:  KSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFSNVCPKIEALTDRVMMFQRICCRIHSISEA
        K+++RQI   S K +SV     KLPE+FE+L + F  LD+A+RLL+ KG ++ ++N+CPKIE LT+R+  +  +    H   EA
Subjt:  KSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFSNVCPKIEALTDRVMMFQRICCRIHSISEA

Q9SJW9 CDT1-like protein a, chloroplastic

4.6e-10

37.04

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Query:  EKPAE-LSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSN-----KSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKG
        EKP E + +R+RN  VALS+K I+QAA S   S      + P   S   R   D  S+     KS + + + +KLPEK+E L K F +LD++M L + +G
Subjt:  EKPAE-LSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSN-----KSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKG

Query:  VASNFSNVCPKIEALTDRVMMFQRICCRIHSISEA
            FSN+  +IE LT+R   +  +    H + EA
Subjt:  VASNFSNVCPKIEALTDRVMMFQRICCRIHSISEA

Arabidopsis top hits

e value

%identity

Alignment

AT2G31270.1 homolog of yeast CDT1 A

3.3e-11

37.04

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Query:  EKPAE-LSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSN-----KSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKG
        EKP E + +R+RN  VALS+K I+QAA S   S      + P   S   R   D  S+     KS + + + +KLPEK+E L K F +LD++M L + +G
Subjt:  EKPAE-LSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDLLSN-----KSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKG

Query:  VASNFSNVCPKIEALTDRVMMFQRICCRIHSISEA
            FSN+  +IE LT+R   +  +    H + EA
Subjt:  VASNFSNVCPKIEALTDRVMMFQRICCRIHSISEA

AT3G54710.1 homolog of yeast CDT1 B homolog of yeast CDT1 B

1.5e-11

42.86

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Query:  KSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFSNVCPKIEALTDRVMMFQRICCRIHSISEA
        K+++RQI   S K +SV     KLPE+FE+L + F  LD+A+RLL+ KG ++ ++N+CPKIE LT+R+  +  +    H   EA
Subjt:  KSIRRQIDLLSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFSNVCPKIEALTDRVMMFQRICCRIHSISEA

Sequences

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CDS sequence

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ATGGAGTCATTAAGAATCATGATTTTAAAATTTGAAAGAGAAAACCCCCTTCGAATCACCCATTTTCCCTTTACTTTCCTTCTTTCAATCCTTAACAATGGAGGA
CTCCAAATCTTTACTTCAGGATTCACAATCCTTGAGCTCCAGGACCTGGAGAAGCCTGCGGAGCTCTCTACCAGAACTAGGAACTGTAAGGTTGCGCTTTCAATC
AAAGCGATTAAACAAGCTGCTCAGAGTGTCTCTGAATCCAATCGTCAGTTGCCTCTTGATATGCCTACTCAAGAGAGTAAATCGATTAGAAGACAGATAGATTTG
TTGTCGAATAAAAGTCAGTCGGTTGATAATAAGTCCAAGAAATTGCCTGAGAAATTTGAGATGCTTTGTAAGCTTTTTTATAGTCTGGATTCTGCAATGCGGTTG
TTGCGATTTAAAGGTGTTGCATCCAACTTCTCTAACGTTTGCCCTAAGATCGAAGCCCTCACTGACAGAGTGATGATGTTCCAAAGGATTTGCTGCCGAATCCAT
TCAATTTCCGAAGCCAATATGTTGTCGCAAAATCCAACTTGCTATGGATATCAAGACATCAATTGA

mRNA sequence

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Protein sequence

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MESLRIMILKFERENPLRITHFPFTFLLSILNNGGLQIFTSGFTILELQDLEKPAELSTRTRNCKVALSIKAIKQAAQSVSESNRQLPLDMPTQESKSIRRQIDL
LSNKSQSVDNKSKKLPEKFEMLCKLFYSLDSAMRLLRFKGVASNFSNVCPKIEALTDRVMMFQRICCRIHSISEANMLSQNPTCYGYQDIN

Chy1G012130 (gene) of Cucumber (hystrix) v1 genome