; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy1G013030 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy1G013030
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionHistone H3.2
Genome locationchrH01:16628507..16666082
RNA-Seq ExpressionChy1G013030
SyntenyChy1G013030
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0022414 - reproductive process (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000164 - Histone H3/CENP-A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011659152.1 histone H3-1 isoform X1 [Cucumis sativus]6.09e-8197.74Show/hide
Query:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPP RKSNRTPSGSGAAQSSP+APSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVAL+EIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
Subjt:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

XP_011659153.1 histone H3-like centromeric protein HTR12 isoform X2 [Cucumis sativus]2.45e-8197.74Show/hide
Query:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPP RKSNRTPSGSGAAQSSP+APSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVAL+EIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
Subjt:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

XP_022156549.1 histone H3-like centromeric protein HTR12 [Momordica charantia]5.40e-6481.2Show/hide
Query:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHP  R +NR P GSG A SSP+ PSTPL GRTQNVRQAQ+  +RT  KK+RFRPGTVALREIR  QK+WNLLIPAS FIRAVKEVS QLAP+ITR
Subjt:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKR
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

XP_022959605.1 histone H3-like centromeric protein HTR12 [Cucurbita moschata]7.25e-6280.45Show/hide
Query:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARA+HP  R SNR PS +GA+ SS +APSTPL+GRTQ+ RQ Q+  SRT  KK+RFRPGTVALREIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TR
Subjt:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKR
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

XP_038896752.1 histone H3-like centromeric protein HTR12 [Benincasa hispida]9.99e-7490.98Show/hide
Query:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPP RKSNR PSG+GAAQSSP+APSTPL+GRTQNV QAQ+S  RT KKKKRFRPGTVALREIR+LQKSWNLLIPASCFIRAVKEVS QLAPQITR
Subjt:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

TrEMBL top hitse value%identityAlignment
A0A0A0K4F4 Histone H3.21.1e-6297.74Show/hide
Query:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPP RKSNRTPSGSGAAQSSP+APSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVAL+EIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
Subjt:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

A0A1S3CG56 Histone H3.26.0e-3781.48Show/hide
Query:  APSTPLNGRTQNVRQAQNSSSRTIKKKK--RFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTM
        +PS P +       + Q SS  TIK K+  RFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTM
Subjt:  APSTPLNGRTQNVRQAQNSSSRTIKKKK--RFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTM

Query:  LCAIHAKR
        LCAIHAKR
Subjt:  LCAIHAKR

A0A6J1DTT5 Histone H3.21.8e-4981.2Show/hide
Query:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHP  R +NR P GSG A SSP+ PSTPL GRTQNVRQAQ+  +RT  KK+RFRPGTVALREIR  QK+WNLLIPAS FIRAVKEVS QLAP+ITR
Subjt:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKR
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

A0A6J1H6R9 Histone H3.27.5e-4880.45Show/hide
Query:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARA+HP  R SNR PS +GA+ SS +APSTPL+GRTQ+ RQ Q+  SRT  KK+RFRPGTVALREIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TR
Subjt:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKR
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

A0A6J1KTZ4 Histone H3.27.5e-4880.45Show/hide
Query:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARA+HP  R SNR PS +GA+ SS +APSTPL+GRTQ+ RQ Q+  SRT  KK+RFRPGTVALREIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TR
Subjt:  MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKR
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

SwissProt top hitse value%identityAlignment
P81195 Histone H3-1 (Fragment)1.3e-1755.91Show/hide
Query:  RQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        + AQ + S  +KK  RFRPGTVALREIR  QKS  LLI    F R V+E++ +    + R+Q++A++ALQEAAE ++V LFEDT LCAIHAKR
Subjt:  RQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

Q59LN9 Histone H3-like centromeric protein CSE41.0e-1750.43Show/hide
Query:  STPLNGRTQNVRQAQNSSSRTIKK-KKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVS-NQLAPQI-TRWQAEALVALQEAAEDFLVHLFEDTML
        ++ L  RT   R   N   RT+ + KKR+RPGT ALREIR  QKS +LLI    F R V+E+S + + P    RWQ+ A++ALQEA+E FL+HL EDT L
Subjt:  STPLNGRTQNVRQAQNSSSRTIKK-KKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVS-NQLAPQI-TRWQAEALVALQEAAEDFLVHLFEDTML

Query:  CAIHAKRPPKFQSPIHI
        CAIHAKR    Q  I +
Subjt:  CAIHAKRPPKFQSPIHI

Q7RXR3 Histone H3-like centromeric protein hH3v8.3e-2045Show/hide
Query:  PHRKSNRTPSG--SGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAP--QITRWQA
        P +K   T S   S  A + P+  +TP   R       Q        KK+R+RPGT+AL+EIRN Q++ +LL+    F R V+E++ Q  P  +  RWQ+
Subjt:  PHRKSNRTPSG--SGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAP--QITRWQA

Query:  EALVALQEAAEDFLVHLFEDTMLCAIHAKRPPKFQSPIHI
        +A++ALQEAAE FLVHLFEDT LCAIHAKR    Q  I +
Subjt:  EALVALQEAAEDFLVHLFEDTMLCAIHAKRPPKFQSPIHI

Q8RVQ9 Histone H3-like centromeric protein HTR123.3e-2456.78Show/hide
Query:  GSGAAQSSP-SAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED
        G    Q++P ++P+T      +  RQA    S+  KK  R+RPGTVAL+EIR+ QK  NLLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED
Subjt:  GSGAAQSSP-SAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED

Query:  FLVHLFEDTMLCAIHAKR
        +LV LF D+MLCAIHA+R
Subjt:  FLVHLFEDTMLCAIHAKR

Q9Y812 Histone H3-like centromeric protein cnp11.2e-1859.3Show/hide
Query:  KKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQIT-----RWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        +KKR+RPGT ALREIR  Q+S +LLI    F R V+E+S++     +     RWQ+ AL  LQEAAE FLVHLFEDT LCAIHAKR
Subjt:  KKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQIT-----RWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

Arabidopsis top hitse value%identityAlignment
AT1G01370.1 Histone superfamily protein2.3e-2556.78Show/hide
Query:  GSGAAQSSP-SAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED
        G    Q++P ++P+T      +  RQA    S+  KK  R+RPGTVAL+EIR+ QK  NLLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED
Subjt:  GSGAAQSSP-SAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED

Query:  FLVHLFEDTMLCAIHAKR
        +LV LF D+MLCAIHA+R
Subjt:  FLVHLFEDTMLCAIHAKR

AT1G01370.2 Histone superfamily protein2.3e-2556.78Show/hide
Query:  GSGAAQSSP-SAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED
        G    Q++P ++P+T      +  RQA    S+  KK  R+RPGTVAL+EIR+ QK  NLLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED
Subjt:  GSGAAQSSP-SAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED

Query:  FLVHLFEDTMLCAIHAKR
        +LV LF D+MLCAIHA+R
Subjt:  FLVHLFEDTMLCAIHAKR

AT1G09200.1 Histone superfamily protein1.4e-1755.79Show/hide
Query:  RQAQNSSSRT--IKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        + A+ S+  T  +KK  RFRPGTVALREIR  QKS  LLI    F R V+E++      + R+Q+ A+ ALQEAAE +LV LFEDT LCAIHAKR
Subjt:  RQAQNSSSRT--IKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

AT3G27360.1 Histone superfamily protein1.4e-1755.79Show/hide
Query:  RQAQNSSSRT--IKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        + A+ S+  T  +KK  RFRPGTVALREIR  QKS  LLI    F R V+E++      + R+Q+ A+ ALQEAAE +LV LFEDT LCAIHAKR
Subjt:  RQAQNSSSRT--IKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR

AT5G10390.1 Histone superfamily protein1.4e-1755.79Show/hide
Query:  RQAQNSSSRT--IKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR
        + A+ S+  T  +KK  RFRPGTVALREIR  QKS  LLI    F R V+E++      + R+Q+ A+ ALQEAAE +LV LFEDT LCAIHAKR
Subjt:  RQAQNSSSRT--IKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCGAGCCAGGCATCCACCCCATAGGAAGTCCAATCGCACGCCATCAGGTTCTGGAGCTGCACAGTCTTCCCCGAGTGCCCCTTCGACGCCACTTAATGGGAGAAC
GCAAAATGTCAGGCAAGCTCAAAACTCATCATCAAGAACAATAAAGAAAAAAAAACGCTTCAGACCAGGGACAGTGGCATTAAGAGAAATTCGGAATCTCCAGAAATCAT
GGAATCTGCTAATTCCAGCTAGCTGTTTCATCCGAGCAGTGAAAGAAGTAAGCAACCAGCTGGCTCCACAGATTACGCGTTGGCAAGCTGAAGCTTTAGTAGCTCTTCAG
GAAGCAGCAGAAGATTTTTTGGTTCACCTATTTGAAGATACCATGCTGTGTGCTATTCATGCCAAACGTCCTCCAAAGTTCCAATCCCCCATCCATATCAAATTTGACTC
GAGATACGAAGTTTATGTTAGCTATCTTAAAGAAGATTATATTGTTGGAGTTGTAATAAGTGTAAAACCCACCCGTCTTATCAAATCTCGAAATTTGAAAGAACAATTTA
CTAAGAAGTATGATATATTCATTCTTCATAAAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCGAGCCAGGCATCCACCCCATAGGAAGTCCAATCGCACGCCATCAGGTTCTGGAGCTGCACAGTCTTCCCCGAGTGCCCCTTCGACGCCACTTAATGGGAGAAC
GCAAAATGTCAGGCAAGCTCAAAACTCATCATCAAGAACAATAAAGAAAAAAAAACGCTTCAGACCAGGGACAGTGGCATTAAGAGAAATTCGGAATCTCCAGAAATCAT
GGAATCTGCTAATTCCAGCTAGCTGTTTCATCCGAGCAGTGAAAGAAGTAAGCAACCAGCTGGCTCCACAGATTACGCGTTGGCAAGCTGAAGCTTTAGTAGCTCTTCAG
GAAGCAGCAGAAGATTTTTTGGTTCACCTATTTGAAGATACCATGCTGTGTGCTATTCATGCCAAACGTCCTCCAAAGTTCCAATCCCCCATCCATATCAAATTTGACTC
GAGATACGAAGTTTATGTTAGCTATCTTAAAGAAGATTATATTGTTGGAGTTGTAATAAGTGTAAAACCCACCCGTCTTATCAAATCTCGAAATTTGAAAGAACAATTTA
CTAAGAAGTATGATATATTCATTCTTCATAAAAGGTAA
Protein sequenceShow/hide protein sequence
MARARHPPHRKSNRTPSGSGAAQSSPSAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALREIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQ
EAAEDFLVHLFEDTMLCAIHAKRPPKFQSPIHIKFDSRYEVYVSYLKEDYIVGVVISVKPTRLIKSRNLKEQFTKKYDIFILHKR