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Chy1G013380 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy1G013380
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchrH01:17373606..17373784
RNA-Seq ExpressionChy1G013380
SyntenyChy1G013380
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0043489 - RNA stabilization (biological process)
GO:0009536 - plastid (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064575.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.09e-2586.44Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        MESVGV+PTA+TY IFIDYFGKSGD GK VETFEKMKAKGIVPN  ACNASLYSLA+MG
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

KAE8649937.1 hypothetical protein Csa_012376 [Cucumis sativus]1.46e-2484.75Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        MESVGVQPTA+TY  FIDYFGKSG+ GK VETFEKMKAKGIVPN  ACNASLYSLA+MG
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

XP_008452843.1 PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X1 [Cucumis melo]3.09e-2586.44Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        MESVGV+PTA+TY IFIDYFGKSGD GK VETFEKMKAKGIVPN  ACNASLYSLA+MG
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

XP_022142283.1 pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Momordica charantia]1.46e-2483.05Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        ME++GVQPTA+TY IFIDYFGKSGD GK VETFEKMKA+GIVPN  ACNASLYSLA+MG
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

XP_038897914.1 pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Benincasa hispida]5.75e-2584.75Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        MES+GVQPTA+TY IFIDYFGKSGD GK VETFEKMKA+GIVPN  ACNASLYSLA+MG
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

TrEMBL top hitse value%identityAlignment
A0A1S3BUU7 pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X12.6e-2086.44Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        MESVGV+PTA+TY IFIDYFGKSGD GK VETFEKMKAKGIVPN  ACNASLYSLA+MG
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

A0A5D3D8X9 Pentatricopeptide repeat-containing protein2.6e-2086.44Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        MESVGV+PTA+TY IFIDYFGKSGD GK VETFEKMKAKGIVPN  ACNASLYSLA+MG
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

A0A6J1CMX2 pentatricopeptide repeat-containing protein At4g31850, chloroplastic1.0e-1983.05Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        ME++GVQPTA+TY IFIDYFGKSGD GK VETFEKMKA+GIVPN  ACNASLYSLA+MG
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

A0A6J1FAM6 pentatricopeptide repeat-containing protein At4g31850, chloroplastic2.2e-1983.05Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        MES+GVQPTA+TY IFIDYFGKSGD GK VETFEKMKA+GIVPN  ACNASLYSLA+ G
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

A0A6J1ILH6 pentatricopeptide repeat-containing protein At4g31850, chloroplastic2.2e-1983.05Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        MES+GVQPTA+TY IFIDYFGKSGD GK VETFEKMKA+GIVPN  ACNASLYSLA+ G
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

SwissProt top hitse value%identityAlignment
A0A1D6IEG9 Pentatricopeptide repeat-containing protein CRP1, chloroplastic4.4e-0435.59Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        M++ GV+P    YN+ ID FGK    G  ++ F KM+ +GI P+    N  + +  K G
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

P0C894 Putative pentatricopeptide repeat-containing protein At2g021501.6e-0642.37Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        M   G +PT FTYNI ID   K GD       FE+MK +G+VP+T   N+ +    K+G
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

Q9LS88 Pentatricopeptide repeat-containing protein At3g230202.6e-0439.22Show/hide
Query:  TAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        +++TYN  ID +GKSG   +  ETF++M  +GIVP T   N  ++     G
Subjt:  TAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

Q9LYZ9 Pentatricopeptide repeat-containing protein At5g028603.3e-0440Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDA-GKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        ME  G +PT  TYN+ ++ FGK G    K+    EKMK+ GI P+    N +L +  K G
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDA-GKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

Q9SZ52 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic4.8e-1972.88Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        MES+GV+PTA+TY +FIDY+GKSGD+   +ETFEKMK KGI PN  ACNASLYSLAK G
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

Arabidopsis top hitse value%identityAlignment
AT2G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.1e-0742.37Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        M   G +PT FTYNI ID   K GD       FE+MK +G+VP+T   N+ +    K+G
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

AT2G18940.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.0e-0533.33Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDA-GKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        M+ +G  PT  TYN+ +D FGK G +  K++   ++M++KG+  +   C+  L + A+ G
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDA-GKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

AT3G23020.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.8e-0539.22Show/hide
Query:  TAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        +++TYN  ID +GKSG   +  ETF++M  +GIVP T   N  ++     G
Subjt:  TAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

AT4G31850.1 proton gradient regulation 33.4e-2072.88Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        MES+GV+PTA+TY +FIDY+GKSGD+   +ETFEKMK KGI PN  ACNASLYSLAK G
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMG

AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein2.4e-0540Show/hide
Query:  MESVGVQPTAFTYNIFIDYFGKSGDA-GKVVETFEKMKAKGIVPNTAACNASLYSLAKMG
        ME  G +PT  TYN+ ++ FGK G    K+    EKMK+ GI P+    N +L +  K G
Subjt:  MESVGVQPTAFTYNIFIDYFGKSGDA-GKVVETFEKMKAKGIVPNTAACNASLYSLAKMG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCCGTAGGTGTTCAACCTACTGCTTTTACATACAATATTTTTATTGACTATTTTGGGAAATCTGGAGATGCTGGCAAAGTTGTTGAGACCTTTGAGAAGATGAA
AGCTAAAGGAATTGTTCCAAATACTGCAGCGTGCAATGCATCGTTGTACAGTCTTGCTAAAATGGGGAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATCCGTAGGTGTTCAACCTACTGCTTTTACATACAATATTTTTATTGACTATTTTGGGAAATCTGGAGATGCTGGCAAAGTTGTTGAGACCTTTGAGAAGATGAA
AGCTAAAGGAATTGTTCCAAATACTGCAGCGTGCAATGCATCGTTGTACAGTCTTGCTAAAATGGGGAG
Protein sequenceShow/hide protein sequence
MESVGVQPTAFTYNIFIDYFGKSGDAGKVVETFEKMKAKGIVPNTAACNASLYSLAKMGX