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Chy1G013610 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy1G013610
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
Genome locationchrH01:18154889..18157559
RNA-Seq ExpressionChy1G013610
SyntenyChy1G013610
Gene Ontology termsGO:0010027 - thylakoid membrane organization (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsIPR040003 - Plastoglobular protein 18-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139667.1 uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]1.71e-10596.63Show/hide
Query:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGVTSSVSQSPFSLVTTKPKITHYS PSLLLFRSSST SNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSSADADSESVVNQDPSLGE
        GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARD+KEVQGPVSSSVISP IEV SSPTSSS DADSESVVNQDPSLGE
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSSADADSESVVNQDPSLGE

XP_008447268.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo]1.18e-9690.45Show/hide
Query:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSS +TSSVS SPFSLV TKPKITHYSSPSLL FRSSST SNL+FRGISHFQPNG SR LARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSSADADSESVVNQDPSLGE
        GIG+LQAEQQKQITDFQDEVIERAKKAKEKAAR+AKEVQ PVSSSVISPTIEVSSSPTSSS DADSES VNQDP LG+
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSSADADSESVVNQDPSLGE

XP_022953678.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata]1.41e-7070.81Show/hide
Query:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGV SSVS S FS+V TK KITH SSPSL+ FRSSST SNLKFR      PNG  RF+A CSSGDGD+RTVLDAFF+GKA AE LTER+EST+GEVL 
Subjt:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSS-------ADADSESVVNQDPSLGE
         IGRLQAE+Q+QI DFQ+EVI+RAKKAKEKA RDAKE QGP+SSS+IS TIEV+SSPT+SS        +A SE+VVNQDP  G+
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSS-------ADADSESVVNQDPSLGE

XP_022991713.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima]2.00e-7070.81Show/hide
Query:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGV SSVS S FS++ T+ KITH SSPSL+ FRSSST SNLKFR      PNG  RF+A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+GEVLS
Subjt:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSS-------ADADSESVVNQDPSLGE
         IGRLQAE+Q+QI DFQ+EVIERAKKAKEKA RDAKE QGP+SSS++S TIEV+SSPT SS        +A SE+VVNQDP  G+
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSS-------ADADSESVVNQDPSLGE

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]8.86e-9485.41Show/hide
Query:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGVTSSVSQSPFSLV TKPKITHYSS SLLLFRSSST SNLKFR ISHFQPNG  RF+ARCSSGDGDSRTVLDAFFLGKALAEALTERIEST+GEVLS
Subjt:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSS-------ADADSESVVNQDPSLGE
        GIGRLQAEQQKQITDFQ+EVIERAKKAK+KAARDAKEVQGPVSSS+ SPTIEV+SSPT S+        D DSE+VVNQDP LG+
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSS-------ADADSESVVNQDPSLGE

TrEMBL top hitse value%identityAlignment
A0A0A0K6Q2 Uncharacterized protein3.6e-8196.63Show/hide
Query:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGVTSSVSQSPFSLVTTKPKITHYS PSLLLFRSSST SNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSSADADSESVVNQDPSLGE
        GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARD+KEVQGPVSSSVISP IEV SSPTSSS DADSESVVNQDPSLGE
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSSADADSESVVNQDPSLGE

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X11.9e-7490.45Show/hide
Query:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSS +TSSVS SPFSLV TKPKITHYSSPSLL FRSSST SNL+FRGISHFQPNG SR LARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSSADADSESVVNQDPSLGE
        GIG+LQAEQQKQITDFQDEVIERAKKAKEKAAR+AKEVQ PVSSSVISPTIEVSSSPTSSS DADSES VNQDP LG+
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSSADADSESVVNQDPSLGE

A0A6J1DJG4 uncharacterized protein At4g13200, chloroplastic3.9e-5167.57Show/hide
Query:  SGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARC---------SSGDGDSRTVLDAFFLGKALAEALTERIES
        SG+ +SVS SPFSL+ TKPK TH+SSP+L + RS ST SNLK RGI HF PN   R  ARC          SGDGDSRTVLDAFFLGKALAEALTERIES
Subjt:  SGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARC---------SSGDGDSRTVLDAFFLGKALAEALTERIES

Query:  TIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTS--SSADADSESVVNQDPSL
        T+GEVLSGIGRLQAE+QKQI DFQ+EVIERAK+AK+KAARD+ EVQ P+S S+ SPTI V+S+     S  D  SES VN DP L
Subjt:  TIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTS--SSADADSESVVNQDPSL

A0A6J1GNZ1 uncharacterized protein At4g13200, chloroplastic-like9.9e-5570.81Show/hide
Query:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGV SSVS S FS+V TK KITH SSPSL+ FRSSST SNLKFR      PNG  RF+A CSSGDGD+RTVLDAFF+GKA AE LTER+EST+GEVL 
Subjt:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTS-------SSADADSESVVNQDPSLGE
         IGRLQAE+Q+QI DFQ+EVI+RAKKAKEKA RDAKE QGP+SSS+IS TIEV+SSPT+       SS +A SE+VVNQDP  G+
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTS-------SSADADSESVVNQDPSLGE

A0A6J1JX27 uncharacterized protein At4g13200, chloroplastic-like1.3e-5470.81Show/hide
Query:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS
        MSSGV SSVS S FS++ T+ KITH SSPSL+ FRSSST SNLKFR      PNG  RF+A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+GEVLS
Subjt:  MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTS-------SSADADSESVVNQDPSLGE
         IGRLQAE+Q+QI DFQ+EVIERAKKAKEKA RDAKE QGP+SSS++S TIEV+SSPT        SS +A SE+VVNQDP  G+
Subjt:  GIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTS-------SSADADSESVVNQDPSLGE

SwissProt top hitse value%identityAlignment
P73628 Thylakoid protein sll17698.2e-0637.5Show/hide
Query:  VLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIE
        VL AFFLG+A AE L+E++E  +   LS +G+  AEQ++ +  F  EV  RA     +       V GPVS+  +  T++
Subjt:  VLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIE

Q8LDV3 Uncharacterized protein At4g13200, chloroplastic1.1e-2147.59Show/hide
Query:  RSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARD
        RS+S RSN   +G                 SG+ ++++VLDAFFLGKALAE + ERIEST+GEVLS IG+ QAEQQKQ+ + Q+EV+ERAKKAKE+AAR+
Subjt:  RSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARD

Query:  AKEVQGPVSSSVI----SPTIEVSSSPTSSSADADSESVVNQDPS
          E QG V+S  +    +P   V +S TS+S       +V+ + S
Subjt:  AKEVQGPVSSSVI----SPTIEVSSSPTSSSADADSESVVNQDPS

Arabidopsis top hitse value%identityAlignment
AT4G13200.1 unknown protein7.5e-2347.59Show/hide
Query:  RSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARD
        RS+S RSN   +G                 SG+ ++++VLDAFFLGKALAE + ERIEST+GEVLS IG+ QAEQQKQ+ + Q+EV+ERAKKAKE+AAR+
Subjt:  RSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEVIERAKKAKEKAARD

Query:  AKEVQGPVSSSVI----SPTIEVSSSPTSSSADADSESVVNQDPS
          E QG V+S  +    +P   V +S TS+S       +V+ + S
Subjt:  AKEVQGPVSSSVI----SPTIEVSSSPTSSSADADSESVVNQDPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGTGGGGTTACATCTTCTGTTTCCCAATCTCCCTTTTCACTTGTGACCACTAAACCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCTATTTCGC
TCCTCTTCGACTCGTTCAAATCTCAAATTTCGTGGAATTTCACATTTTCAACCAAATGGGCCTTCCAGATTCTTAGCTCGTTGCAGCTCTGGTGATGGTGACAGC
AGGACCGTTCTAGATGCCTTTTTTTTAGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATTGAGTCAACAATTGGAGAGGTTTTGAGTGGGATTGGTAGGCTG
CAAGCTGAACAACAAAAACAAATTACTGATTTCCAGGATGAAGTGATAGAAAGAGCTAAAAAGGCCAAGGAAAAAGCAGCACGTGATGCCAAAGAAGTACAAGGA
CCCGTTTCCTCTTCAGTAATATCGCCTACAATCGAAGTTTCTTCGTCTCCAACTTCTTCAAGTGCCGATGCAGATTCAGAAAGTGTTGTGAATCAGGATCCTTCC
CTTGGTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGTGGGGTTACATCTTCTGTTTCCCAATCTCCCTTTTCACTTGTGACCACTAAACCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCTATTTCGC
TCCTCTTCGACTCGTTCAAATCTCAAATTTCGTGGAATTTCACATTTTCAACCAAATGGGCCTTCCAGATTCTTAGCTCGTTGCAGCTCTGGTGATGGTGACAGC
AGGACCGTTCTAGATGCCTTTTTTTTAGGAAAAGCTTTGGCAGAAGCCTTAACTGAGCGAATTGAGTCAACAATTGGAGAGGTTTTGAGTGGGATTGGTAGGCTG
CAAGCTGAACAACAAAAACAAATTACTGATTTCCAGGATGAAGTGATAGAAAGAGCTAAAAAGGCCAAGGAAAAAGCAGCACGTGATGCCAAAGAAGTACAAGGA
CCCGTTTCCTCTTCAGTAATATCGCCTACAATCGAAGTTTCTTCGTCTCCAACTTCTTCAAGTGCCGATGCAGATTCAGAAAGTGTTGTGAATCAGGATCCTTCC
CTTGGTGAATAA
Protein sequenceShow/hide protein sequence
MSSGVTSSVSQSPFSLVTTKPKITHYSSPSLLLFRSSSTRSNLKFRGISHFQPNGPSRFLARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRL
QAEQQKQITDFQDEVIERAKKAKEKAARDAKEVQGPVSSSVISPTIEVSSSPTSSSADADSESVVNQDPSLGE