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Chy1G015280 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy1G015280
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPSII 6.1 kDa protein
Genome locationchrH01:21096616..21097607
RNA-Seq ExpressionChy1G015280
SyntenyChy1G015280
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]3.11e-7097.41Show/hide
Query:  LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYI
        L SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAFYI
Subjt:  LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYI

Query:  VYTSTLEEDEESGLSL
        VYTSTLEEDEESGLSL
Subjt:  VYTSTLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]1.62e-7499.16Show/hide
Query:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA
        NRLL SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA
Subjt:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA

Query:  FYIVYTSTLEEDEESGLSL
        FYIVYTSTLEEDEESGLSL
Subjt:  FYIVYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]1.87e-7198.28Show/hide
Query:  LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYI
        L SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAFYI
Subjt:  LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYI

Query:  VYTSTLEEDEESGLSL
        VYTSTLEEDEESGLSL
Subjt:  VYTSTLEEDEESGLSL

XP_031745255.1 photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus]1.66e-7192.91Show/hide
Query:  NRLLQSASPAPFLL--------GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILL
        NRLL SASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILL
Subjt:  NRLLQSASPAPFLL--------GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILL

Query:  GVFALIWAFYIVYTSTLEEDEESGLSL
        GVFALIWAFYIVYTSTLEEDEESGLSL
Subjt:  GVFALIWAFYIVYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]8.98e-7295.8Show/hide
Query:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA
        NR L +ASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWIL GVF LIWA
Subjt:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA

Query:  FYIVYTSTLEEDEESGLSL
        FYIVYTSTLEEDEESGLSL
Subjt:  FYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein5.4e-5799.16Show/hide
Query:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA
        NRLL SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA
Subjt:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA

Query:  FYIVYTSTLEEDEESGLSL
        FYIVYTSTLEEDEESGLSL
Subjt:  FYIVYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein1.1e-5498.28Show/hide
Query:  LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYI
        L SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAFYI
Subjt:  LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYI

Query:  VYTSTLEEDEESGLSL
        VYTSTLEEDEESGLSL
Subjt:  VYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein9.6e-5497.41Show/hide
Query:  LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYI
        L SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAFYI
Subjt:  LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYI

Query:  VYTSTLEEDEESGLSL
        VYTSTLEEDEESGLSL
Subjt:  VYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein7.6e-5189.08Show/hide
Query:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA
        NR L +ASP+PFLLGLPALGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF  IWA
Subjt:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA

Query:  FYIVYTSTLEEDEESGLSL
        FYI+YTSTLEEDEESGLSL
Subjt:  FYIVYTSTLEEDEESGLSL

A0A6J1H5C6 PSII 6.1 kDa protein4.9e-5088.24Show/hide
Query:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA
        NR L +ASP  FLLGLPALGK+GGVRC ++GK NGEVENKS NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF  IW 
Subjt:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA

Query:  FYIVYTSTLEEDEESGLSL
        FYIVYTSTLEEDEESGLSL
Subjt:  FYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic5.8e-3270.64Show/hide
Query:  LLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLE
        +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVF LIW F+ VYTS+LE
Subjt:  LLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLE

Query:  EDEESGLSL
        EDEESGLSL
Subjt:  EDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic3.6e-3465.55Show/hide
Query:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA
        +R+  S+SP   +LGLP++ K+  V CS+E K +      ++N  MGASL+AAA AAT+S+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVF LIWA
Subjt:  NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWA

Query:  FYIVYTSTLEEDEESGLSL
         Y VY S LEEDEESGLSL
Subjt:  FYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic1.6e-2158.1Show/hide
Query:  LGLPALGKKGG--VRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEE
        LGLP +  +    VRC+   +        ++  G GASL+A A  A   +PAMALVDER+STEGTGL  GLSNNLLGWILLGVF LIW+ Y +YTS LEE
Subjt:  LGLPALGKKGG--VRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEE

Query:  DEESG
        DEESG
Subjt:  DEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic1.4e-0940Show/hide
Query:  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLE--EDEESGLSL
        S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVF  +WA + +    L   ED + GL L
Subjt:  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W4.1e-3370.64Show/hide
Query:  LLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLE
        +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVF LIW F+ VYTS+LE
Subjt:  LLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLE

Query:  EDEESGLSL
        EDEESGLSL
Subjt:  EDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACCGCCTTCTGCAGTCGGCTTCACCCGCCCCTTTCCTTCTTGGGTTACCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGT
AGAGAACAAATCCAGCAACTTGGGGATGGGGGCGTCCTTGATAGCTGCGGCGTGTGCTGCAACGATGTCGAGCCCGGCGATGGCTTTGGTAGATGAGAGACTGAGCACTG
AAGGGACTGGGCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAA
GAGGATGAAGAATCTGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
AACCGCCTTCTGCAGTCGGCTTCACCCGCCCCTTTCCTTCTTGGGTTACCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGT
AGAGAACAAATCCAGCAACTTGGGGATGGGGGCGTCCTTGATAGCTGCGGCGTGTGCTGCAACGATGTCGAGCCCGGCGATGGCTTTGGTAGATGAGAGACTGAGCACTG
AAGGGACTGGGCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAA
GAGGATGAAGAATCTGGCTTATCTCTTTAA
Protein sequenceShow/hide protein sequence
NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLE
EDEESGLSL