; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy1G016400 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy1G016400
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDNA ligase 1-like isoform X1
Genome locationchrH01:22378979..22381879
RNA-Seq ExpressionChy1G016400
SyntenyChy1G016400
Gene Ontology termsNA
InterPro domainsIPR013730 - Fyv7/TAP26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593160.1 hypothetical protein SDJN03_12636, partial [Cucurbita argyrosperma subsp. sororia]1.21e-9888.27Show/hide
Query:  RSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRCGKE
        RSKSKFM  NKH N+KRLGGKG S +AFANAKSTTDYYNPALIKKQ+EFYKNAKHVNKYKKLVKHQN  NERPSSS+V L+EGENE  FENQTNGR G E
Subjt:  RSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRCGKE

Query:  RNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        RNKGVPSLQ +YERKH+EKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  RNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

XP_004136058.2 uncharacterized protein LOC101216293 [Cucumis sativus]6.02e-11597.25Show/hide
Query:  HNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRC
        HNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQ+EFYKNAKHVNKYKKLVKHQNQPNERPSSSTV L+EGENETKFENQTN RC
Subjt:  HNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRC

Query:  GKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        GKERNKGVPSLQA+YERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
Subjt:  GKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

XP_008451439.1 PREDICTED: uncharacterized protein LOC103492733 [Cucumis melo]6.73e-11295.6Show/hide
Query:  HNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRC
        H NRSKSKFMN NKHNNIKRLGGK LSLEAFANAKSTTDYYNPALIKKQ+EFYKNAKHVNKYKKLVKHQNQ NERPSSSTV L+EGENETKFENQTNGRC
Subjt:  HNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRC

Query:  GKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        GKERNKGVPSLQA+YERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
Subjt:  GKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

XP_022960530.1 uncharacterized protein LOC111461241 [Cucurbita moschata]8.55e-9988.27Show/hide
Query:  RSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRCGKE
        RSKSKFM  NKH N+KRLGGKG S +AFANAKSTTDYYNPALIKKQ+EFYKNAKHVNKYKKLVKHQN  NERPSSS+V L+EGENE KFEN+TNGR G E
Subjt:  RSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRCGKE

Query:  RNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        RNKGVPSLQ +YERKH+EKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  RNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

XP_023513566.1 uncharacterized protein LOC111778133 [Cucurbita pepo subsp. pepo]3.48e-9888.2Show/hide
Query:  SKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRCGKER
        SKSKFM  NKH N+KRLGGKG S +AFANAKSTTDYYNPALIKKQ+EFYKNAKHVNKYKKLVKHQN  NERPSSST+ L+EGENE KFENQTNGR G ER
Subjt:  SKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRCGKER

Query:  NKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        NKGVPSLQ +YERKH+EKEKAR EKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  NKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

TrEMBL top hitse value%identityAlignment
A0A0A0K7L3 Uncharacterized protein1.8e-8896.72Show/hide
Query:  KHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGR
        +HNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQ+EFYKNAKHVNKYKKLVKHQNQPNERPSSSTV L+EGENETKFENQTN R
Subjt:  KHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGR

Query:  CGKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        CGKERNKGVPSLQA+YERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
Subjt:  CGKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

A0A1S3BRH3 uncharacterized protein LOC1034927333.8e-8695.08Show/hide
Query:  KHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGR
        +H NRSKSKFMN NKHNNIKRLGGK LSLEAFANAKSTTDYYNPALIKKQ+EFYKNAKHVNKYKKLVKHQNQ NERPSSSTV L+EGENETKFENQTNGR
Subjt:  KHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGR

Query:  CGKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
        CGKERNKGVPSLQA+YERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
Subjt:  CGKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

A0A6J1GP14 uncharacterized protein LOC1114558272.6e-7486.59Show/hide
Query:  NRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRCGK
        NR KS FM N KH N+KRLGGKGLSLEAFAN KSTTDYYNPALIKKQ+EFYKNAKHV+KYKKLVKHQN  NERPSSSTV L+EGEN TK ENQTNGR GK
Subjt:  NRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRCGK

Query:  ERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTN
        ERNKG+PSLQ +YERKHEEKEKARMEKEAIIAAKKEE+ERAKARRN+TREKM KRTQKGQPVMKYRIEHLL+TIGAS N
Subjt:  ERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTN

A0A6J1H9B9 uncharacterized protein LOC1114612411.4e-7586.34Show/hide
Query:  KHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGR
        +   RSKSKFM  NKH N+KRLGGKG S +AFANAKSTTDYYNPALIKKQ+EFYKNAKHVNKYKKLVKHQN  NERPSSS+V L+EGENE KFEN+TNGR
Subjt:  KHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGR

Query:  CGKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
         G ERNKGVPSLQ +YERKH+EKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  CGKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

A0A6J1KV89 uncharacterized protein LOC1114978958.9e-7585.25Show/hide
Query:  KHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGR
        +   RSKSKF   NKH N+KRLGGKG S +AFANAKSTTDYYNPA IKKQ+EFYKNAKHVNKYKKLVKHQN  NERPS+STV L+EGENE KFEN+TNGR
Subjt:  KHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGR

Query:  CGKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH
         G ERNKGVPSLQ +YERKH+EKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  CGKERNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G03180.1 CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink).1.7e-3347.13Show/hide
Query:  KSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRCGKERN
        KSK     K  N++RLGG GLSL+ FAN KS  + YNP+LIKKQKEFYKNAK+V+K++K +K QN P++  +  T K+ + +++ K + ++N R G    
Subjt:  KSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRCGKERN

Query:  KGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS
             ++ +Y++  EE E+ R E+EA+  AKKE +E A++RR   + KM ++T+ GQPVMKYRIEHLLE+I  S
Subjt:  KGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCATAACAATCGCTCCAAATCGAAATTCATGAACAACAATAAACACAATAACATTAAACGGTTGGGAGGGAAGGGCCTTTCGCTTGAGGCATTCGCGAAT
GCTAAATCAACTACCGATTACTATAATCCAGCTTTGATAAAAAAGCAAAAAGAGTTCTATAAGAATGCTAAACATGTCAACAAGTATAAGAAGTTAGTAAAGCAT
CAGAATCAACCGAATGAGAGGCCTTCTAGCTCTACTGTTAAACTTATCGAGGGTGAAAATGAAACCAAATTCGAGAATCAGACGAACGGTAGATGTGGGAAAGAA
AGGAATAAAGGTGTACCTAGTCTTCAGGCAGTGTATGAGAGAAAGCATGAAGAGAAAGAGAAAGCAAGAATGGAGAAAGAAGCCATTATCGCTGCAAAAAAGGAA
GAACGAGAAAGGGCTAAGGCTAGACGAAACTCCACAAGAGAAAAAATGTTCAAAAGGACACAAAAAGGTCAGCCAGTTATGAAGTACAGAATTGAGCATCTTTTG
GAGACTATTGGAGCCTCAACGAACCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCATAACAATCGCTCCAAATCGAAATTCATGAACAACAATAAACACAATAACATTAAACGGTTGGGAGGGAAGGGCCTTTCGCTTGAGGCATTCGCGAAT
GCTAAATCAACTACCGATTACTATAATCCAGCTTTGATAAAAAAGCAAAAAGAGTTCTATAAGAATGCTAAACATGTCAACAAGTATAAGAAGTTAGTAAAGCAT
CAGAATCAACCGAATGAGAGGCCTTCTAGCTCTACTGTTAAACTTATCGAGGGTGAAAATGAAACCAAATTCGAGAATCAGACGAACGGTAGATGTGGGAAAGAA
AGGAATAAAGGTGTACCTAGTCTTCAGGCAGTGTATGAGAGAAAGCATGAAGAGAAAGAGAAAGCAAGAATGGAGAAAGAAGCCATTATCGCTGCAAAAAAGGAA
GAACGAGAAAGGGCTAAGGCTAGACGAAACTCCACAAGAGAAAAAATGTTCAAAAGGACACAAAAAGGTCAGCCAGTTATGAAGTACAGAATTGAGCATCTTTTG
GAGACTATTGGAGCCTCAACGAACCACTAA
Protein sequenceShow/hide protein sequence
MKHNNRSKSKFMNNNKHNNIKRLGGKGLSLEAFANAKSTTDYYNPALIKKQKEFYKNAKHVNKYKKLVKHQNQPNERPSSSTVKLIEGENETKFENQTNGRCGKE
RNKGVPSLQAVYERKHEEKEKARMEKEAIIAAKKEERERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASTNH