; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy1G018170 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy1G018170
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description60S ribosomal protein L44
Genome locationchrH01:23707597..23708751
RNA-Seq ExpressionChy1G018170
SyntenyChy1G018170
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD6794956.1 hypothetical protein E3N88_05852 [Mikania micrantha]6.62e-7187.1Show/hide
Query:  PLFFAVYFGFPLANEPMQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVS
        P +F  + G P+ +     SVNVPKTKKTYCK+KECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVS
Subjt:  PLFFAVYFGFPLANEPMQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVS

Query:  QHPIKRCKHFEIGGDKKGKGTSLF
        QHPIKRCKHFEIGGDKKGKGTSLF
Subjt:  QHPIKRCKHFEIGGDKKGKGTSLF

KJB79863.1 hypothetical protein B456_013G070100 [Gossypium raimondii]1.38e-7096.33Show/hide
Query:  PMQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        P    VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  PMQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

PPD70732.1 hypothetical protein GOBAR_DD32388 [Gossypium barbadense]1.23e-7097.22Show/hide
Query:  MQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK
        M   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK
Subjt:  MQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK

Query:  KGKGTSLF
        KGKGTSLF
Subjt:  KGKGTSLF

RVX02874.1 60S ribosomal protein L44 [Vitis vinifera]4.30e-7197.22Show/hide
Query:  MQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK
        M   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK
Subjt:  MQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK

Query:  KGKGTSLF
        KGKGTSLF
Subjt:  KGKGTSLF

XP_019081385.1 PREDICTED: 60S ribosomal protein L44 isoform X1 [Vitis vinifera]9.56e-7196.3Show/hide
Query:  MQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK
        +   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK
Subjt:  MQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK

Query:  KGKGTSLF
        KGKGTSLF
Subjt:  KGKGTSLF

TrEMBL top hitse value%identityAlignment
A0A068V1D2 Uncharacterized protein1.0e-5395.41Show/hide
Query:  PMQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        P  + VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  PMQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

A0A438J1R3 60S ribosomal protein L447.9e-5497.22Show/hide
Query:  MQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK
        M   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK
Subjt:  MQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDK

Query:  KGKGTSLF
        KGKGTSLF
Subjt:  KGKGTSLF

A0A4D6KPK4 Phosphatidylserine decarboxylase proenzyme 27.9e-5486.51Show/hide
Query:  LFFAVYFGFPLANEPMQRS---VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKH
        L FA +    L   P+ R+   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKH
Subjt:  LFFAVYFGFPLANEPMQRS---VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKH

Query:  VSQHPIKRCKHFEIGGDKKGKGTSLF
        VSQHPIKRCKHFEIGGDKKGKGTSLF
Subjt:  VSQHPIKRCKHFEIGGDKKGKGTSLF

A0A5N6PMS3 Uncharacterized protein4.7e-5487.1Show/hide
Query:  PLFFAVYFGFPLANEPMQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVS
        P +F  + G P+ +     SVNVPKTKKTYCK+KECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVS
Subjt:  PLFFAVYFGFPLANEPMQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVS

Query:  QHPIKRCKHFEIGGDKKGKGTSLF
        QHPIKRCKHFEIGGDKKGKGTSLF
Subjt:  QHPIKRCKHFEIGGDKKGKGTSLF

F6HF51 Uncharacterized protein7.9e-5484.62Show/hide
Query:  IFLPLFFAVYFGFP---LANEPMQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ
        +F  LF + +F F     +      SVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ
Subjt:  IFLPLFFAVYFGFP---LANEPMQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ

Query:  GCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
        GCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Subjt:  GCKHVSQHPIKRCKHFEIGGDKKGKGTSLF

SwissProt top hitse value%identityAlignment
O23290 60S ribosomal protein L36a3.2e-5293.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

O59870 60S ribosomal protein L441.8e-4277.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

P0CQ50 60S ribosomal protein L443.0e-4277.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

P0CQ51 60S ribosomal protein L443.0e-4277.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

Q96499 60S ribosomal protein L448.2e-56100Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein2.3e-5393.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

AT4G14320.1 Zinc-binding ribosomal protein family protein2.3e-5393.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

AT4G14320.2 Zinc-binding ribosomal protein family protein7.9e-4692.39Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAATCTTCCTTCCACTATTCTTTGCTGTTTATTTCGGTTTTCCCCTTGCCAATGAACCTATGCAGCGTTCGGTGAACGTTCCCAAGACAAAGAAAACTTACTGCAA
GAGCAAGGAATGTAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGAT
ATGGTGGACAAACCAAGCCTGTCTTTCACAAGAAGGCTAAAACTACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCACAGCATCCCATTAAG
AGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAATCTTCCTTCCACTATTCTTTGCTGTTTATTTCGGTTTTCCCCTTGCCAATGAACCTATGCAGCGTTCGGTGAACGTTCCCAAGACAAAGAAAACTTACTGCAA
GAGCAAGGAATGTAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGAT
ATGGTGGACAAACCAAGCCTGTCTTTCACAAGAAGGCTAAAACTACAAAGAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCACAGCATCCCATTAAG
AGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTGTTTTAG
Protein sequenceShow/hide protein sequence
MVIFLPLFFAVYFGFPLANEPMQRSVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIK
RCKHFEIGGDKKGKGTSLF