; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G023090 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G023090
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRRM domain-containing protein
Genome locationchrH02:309082..311644
RNA-Seq ExpressionChy2G023090
SyntenyChy2G023090
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134540.1 glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus]1.09e-10594.94Show/hide
Query:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWATTVSFPSV NLRGPIFPNNRLVASNRI LNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
Subjt:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY
        LALE MDCKIFDGRMIYVEIAT GSGSFGGYPRASGPP E PNER NV+QEDVADCWY
Subjt:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY

XP_008439484.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]8.04e-9889.24Show/hide
Query:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWATTVS PS+ NLRGP+FPNN LVASNR  LNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
Subjt:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY
        LALENMDCKIFDGR IYVEIA  GSGSFGGYPR SGPP E    RPNVEQED+ADCWY
Subjt:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY

XP_022977992.1 small RNA-binding protein 11, chloroplastic [Cucurbita maxima]1.24e-8179.75Show/hide
Query:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWA TVSFPS+ NLRGPI  NNRL +S R  LNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAM
Subjt:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY
        LALENMDCK FDGR IYVE+A  GSGSFGGYP  SGPP E P   P +  E+VADCWY
Subjt:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY

XP_023543104.1 small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo]2.05e-8079.11Show/hide
Query:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWA TVSFPS+ NLRGPI  NNRL +S R  LNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAM
Subjt:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY
        LALENMDCK FDGR IYVE+A  GSGSF GYP  SGPP E P   P +  E+VADCWY
Subjt:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY

XP_038883016.1 organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida]3.75e-8070.79Show/hide
Query:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVR--------------------NLPYSTNESRLQEEFSNFGEIAEVLLAKDR
        MWA TVSFPS+ NLRGPI PNNR   S R  LN RASF DYPLASRL+VR                    +LPYST ESRLQEEFSNFGEIAEVLLAKD+
Subjt:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVR--------------------NLPYSTNESRLQEEFSNFGEIAEVLLAKDR

Query:  STKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY
         TKRPKGYAFIQYTCQDDAMLALENMDCK FDGRMIYVE+A  GS SFGGYPR SGPP E    RP VE ++VADCWY
Subjt:  STKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY

TrEMBL top hitse value%identityAlignment
A0A0A0KL21 RRM domain-containing protein5.5e-8194.94Show/hide
Query:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWATTVSFPSV NLRGPIFPNNRLVASNRI LNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
Subjt:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY
        LALE MDCKIFDGRMIYVEIAT GSGSFGGYPRASGPP E PNER NV+QEDVADCWY
Subjt:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY

A0A1S3AYG0 glycine-rich RNA-binding protein 4, mitochondrial5.8e-7589.24Show/hide
Query:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWATTVS PS+ NLRGP+FPNN LVASNR  LNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
Subjt:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY
        LALENMDCKIFDGR IYVEIA  GSGSFGGYPR SGP    P ERPNVEQED+ADCWY
Subjt:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY

A0A6J1CXC0 glycine-rich RNA-binding protein 4, mitochondrial5.9e-5974.05Show/hide
Query:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWA+TVSFP ++N R PI  +N    + R  LNLRASFFDYPLASR+MVRNLPYST+E RLQEEFS+FGE+AEVLLAKDR TKRP+GYAFIQYTCQDDAM
Subjt:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY
        LALENMD K FDGR IYVE+A  GS SFGGYPR SGP    P ERP +E E+VADCWY
Subjt:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY

A0A6J1EGU7 small RNA-binding protein 11, chloroplastic3.7e-6178.48Show/hide
Query:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWA TVSFPS+ NLRGPI  +NRL +S R  LNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAM
Subjt:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY
        LALENMDCK FDGR IYVE+A  GSGSF GYP  SGPP E P   P +  E+VADCWY
Subjt:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY

A0A6J1IJY1 small RNA-binding protein 11, chloroplastic1.1e-6279.75Show/hide
Query:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MWA TVSFPS+ NLRGPI  NNRL +S R  LNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAM
Subjt:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY
        LALENMDCK FDGR IYVE+A  GSGSFGGYP  SGPP E P   P +  E+VADCWY
Subjt:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY

SwissProt top hitse value%identityAlignment
Q4WJT7 Multiple RNA-binding domain-containing protein 12.3e-1245Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIAT
        L+SRL VRNLPY  +ES L+  FS FG+I E+ +A D  +   KG+A++QY   D A+ A + +D K F GR++++  AT
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIAT

Q54PB2 Multiple RNA-binding domain-containing protein 18.0e-1346.67Show/hide
Query:  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYV
        + R+ VRNL YST E  L++ FS FG+I+E+ +  D  +K+ KG AFI Y   ++A+ AL +MD K+F GR+I+V
Subjt:  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYV

Q5BGA9 Multiple RNA-binding domain-containing protein 14.0e-1244.74Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYV
        +++RL VRNL Y T ES L+  FS FG+I E+ +A D      KG+A++QY   D A+ A  N+D KIF GR++++
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYV

Q9DED4 Cold-inducible RNA-binding protein B3.0e-1242.53Show/hide
Query:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIATLGSGS-FGGY
        +L +  L + TNE  L++ FS +G+I+EV++ KDR TKR +G+ F+ +   DDA  A+  M+ K  DGR I V+ A   SG   GGY
Subjt:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIATLGSGS-FGGY

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial8.0e-1339.13Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIATLGS----GSFGG
        ++S+L V  L + T++S L++ F++FGE+ E  +  DR T R +G+ F+ ++C+D A  A++ MD K  +GR I V +AT  S     SFGG
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIATLGS----GSFGG

Arabidopsis top hitse value%identityAlignment
AT3G23830.1 glycine-rich RNA-binding protein 45.7e-1439.13Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIATLGS----GSFGG
        ++S+L V  L + T++S L++ F++FGE+ E  +  DR T R +G+ F+ ++C+D A  A++ MD K  +GR I V +AT  S     SFGG
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIATLGS----GSFGG

AT3G23830.2 glycine-rich RNA-binding protein 45.7e-1439.13Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIATLGS----GSFGG
        ++S+L V  L + T++S L++ F++FGE+ E  +  DR T R +G+ F+ ++C+D A  A++ MD K  +GR I V +AT  S     SFGG
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIATLGS----GSFGG

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.0e-1444.3Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIA
        ++++L V  L   T +  L++ FS FG+I E  L +D  T+RPKG+ FI +  +DDA  AL+++D KI DGR+I+VE+A
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYVEIA

AT4G19610.1 nucleotide binding;nucleic acid binding;RNA binding1.3e-1346.58Show/hide
Query:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYV
        RL VRNLPY+  E  L E FS FG+I+EV L  D+ TKR +G A+I Y   + A  A+E +D   F GR++++
Subjt:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRMIYV

AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.4e-4255.06Show/hide
Query:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM
        MW+ T+SFPS V     + PN R   + R P  ++AS F+YPLAS++MVRNLP+ST+E  L+ EFS FGEIAEV L KD + KR KGYAFIQ+T QDDA 
Subjt:  MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY
        LA+E MD ++++GRMIY++IA  G   F G PR SGPP E  +E      ++VADCWY
Subjt:  LALENMDCKIFDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCGACCACCGTCTCCTTCCCTTCAGTTGTAAATCTTCGGGGACCCATTTTTCCGAATAATCGACTTGTCGCTTCCAATCGCATACCTCTGAATCTTCGAGCTTC
TTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTCTCGAATTTTGGTGAGATTGCTGAAG
TGTTATTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGTTACGCGTTTATTCAATACACGTGCCAAGATGATGCGATGCTCGCTCTGGAAAATATGGATTGCAAGATA
TTTGATGGAAGGATGATCTATGTGGAAATTGCAACACTTGGTAGTGGTTCCTTTGGAGGATATCCAAGAGCCTCTGGACCCCCAAACGAGTGGCCTAACGAGCGGCCTAA
CGTGGAGCAAGAAGATGTGGCAGATTGTTGGTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGCGACCACCGTCTCCTTCCCTTCAGTTGTAAATCTTCGGGGACCCATTTTTCCGAATAATCGACTTGTCGCTTCCAATCGCATACCTCTGAATCTTCGAGCTTC
TTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTCTCGAATTTTGGTGAGATTGCTGAAG
TGTTATTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGTTACGCGTTTATTCAATACACGTGCCAAGATGATGCGATGCTCGCTCTGGAAAATATGGATTGCAAGATA
TTTGATGGAAGGATGATCTATGTGGAAATTGCAACACTTGGTAGTGGTTCCTTTGGAGGATATCCAAGAGCCTCTGGACCCCCAAACGAGTGGCCTAACGAGCGGCCTAA
CGTGGAGCAAGAAGATGTGGCAGATTGTTGGTATTGA
Protein sequenceShow/hide protein sequence
MWATTVSFPSVVNLRGPIFPNNRLVASNRIPLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKI
FDGRMIYVEIATLGSGSFGGYPRASGPPNEWPNERPNVEQEDVADCWY