CuGenDBv2

Gene ID	Chy2G023960
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	E3 ubiquitin-protein ligase arkadia-A, putative
Genome location	chrH02:923866..928668
RNA-Seq Expression	Chy2G023960
Synteny	Chy2G023960
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0052530.1 putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]

3.44e-72

95.69

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Query:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL
        MED H+LQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSA ILVSRNESGFVGFWERLRIKL
Subjt:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL

Query:  AALRSRWCDCFHRSDG
        AALRSRWCDCFHR  G
Subjt:  AALRSRWCDCFHRSDG

KAE8647751.1 hypothetical protein Csa_003767 [Cucumis sativus]

1.87e-86

81.76

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Query:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL
        MEDPHRLQNIPSFKLSRYSSSARDSDA DDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSA ILVSRNESGFVGFWERLRIKL
Subjt:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL

Query:  AALRSRWCDCFHR----------------------------SDGVTILEKKRTGDKADRQTTAFQTFFVG
        AALRSRWCDCFHR                            SDGVTILEKKRTGDKADRQTTAFQTFFV 
Subjt:  AALRSRWCDCFHR----------------------------SDGVTILEKKRTGDKADRQTTAFQTFFVG

KAG7034735.1 hypothetical protein SDJN02_04465, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.40e-66

87.93

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Query:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL
        M+DPH+LQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSA ILV RNES FVGFWERLRIKL
Subjt:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL

Query:  AALRSRWCDCFHRSDG
        AALRSRWCDCF R  G
Subjt:  AALRSRWCDCFHRSDG

XP_022925985.1 uncharacterized protein LOC111433238 [Cucurbita moschata]

4.56e-66

87.93

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Query:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL
        M+DPH+LQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSA ILV RNES FVGFWERLRIKL
Subjt:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL

Query:  AALRSRWCDCFHRSDG
        AALRSRWCDCF R  G
Subjt:  AALRSRWCDCFHRSDG

XP_022977989.1 uncharacterized protein LOC111478115 [Cucurbita maxima]

4.56e-66

87.93

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Query:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL
        M+DPH+LQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSA ILV RNES FVGFWERLRIKL
Subjt:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL

Query:  AALRSRWCDCFHRSDG
        AALRSRWCDCF R  G
Subjt:  AALRSRWCDCFHRSDG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KKP9 Uncharacterized protein

2.9e-55

96.55

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Query:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL
        MEDPHRLQNIPSFKLSRYSSSARDSDA DDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSA ILVSRNESGFVGFWERLRIKL
Subjt:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL

Query:  AALRSRWCDCFHRSDG
        AALRSRWCDCFHR  G
Subjt:  AALRSRWCDCFHRSDG

A0A5A7UBK0 Putative E3 ubiquitin-protein ligase arkadia-A

1.1e-54

95.69

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Query:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL
        MED H+LQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSA ILVSRNESGFVGFWERLRIKL
Subjt:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL

Query:  AALRSRWCDCFHRSDG
        AALRSRWCDCFHR  G
Subjt:  AALRSRWCDCFHRSDG

A0A6J1CYB8 uncharacterized protein LOC111015712

1.3e-42

88.68

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Query:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL
        + + H+LQNIPSFKLSRYSS ARDSDAGDDLRY SLKDILLNSPSYSGVNDFN+FNSSNISIRNELVKRAASAYLQSA ILVSRNES FV FWERLR KL
Subjt:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL

Query:  AALRSR
        AALRSR
Subjt:  AALRSR

A0A6J1EJR7 uncharacterized protein LOC111433238

4.9e-50

87.93

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Query:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL
        M+DPH+LQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSA ILV RNES FVGFWERLRIKL
Subjt:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL

Query:  AALRSRWCDCFHRSDG
        AALRSRWCDCF R  G
Subjt:  AALRSRWCDCFHRSDG

A0A6J1ISV4 uncharacterized protein LOC111478115

4.9e-50

87.93

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Query:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL
        M+DPH+LQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSA ILV RNES FVGFWERLRIKL
Subjt:  MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKL

Query:  AALRSRWCDCFHRSDG
        AALRSRWCDCF R  G
Subjt:  AALRSRWCDCFHRSDG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G18395.1 unknown protein

2.3e-07

40.24

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Query:  DSDAGDDLRYTSLKDILLNS---------PSYSGVND----FNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGF
        D +  ++L+YTSLKD++ +S         P YS  +      +E +SSNI+I NELVKRAAS Y+QS++I+++ + + F  F
Subjt:  DSDAGDDLRYTSLKDILLNS---------PSYSGVND----FNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGF

AT5G06280.1 unknown protein

4.0e-04

41.03

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Query:  YTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKLAA
        YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ  V L S ++S    F+ R+ + L+A
Subjt:  YTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKLAA

AT5G06280.3 unknown protein

4.0e-04

41.03

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Query:  YTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKLAA
        YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ  V L S ++S    F+ R+ + L+A
Subjt:  YTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKLAA

Sequences

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CDS sequence

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ATGGAAGACCCTCATAGGCTTCAAAACATACCTTCTTTCAAATTGTCCCGTTATTCCTCCAGCGCCAGAGACTCCGATGCCGGCGATGACCTCCGATACACTAGC
TTGAAAGACATTCTTCTGAATTCGCCGTCGTACAGCGGCGTAAATGATTTCAACGAATTCAATTCGTCAAATATTTCGATCCGAAACGAGCTGGTGAAAAGAGCG
GCCTCGGCCTACCTTCAATCGGCGGTCATTTTGGTCAGCCGGAATGAAAGCGGTTTCGTCGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGTTCC
CGTTGGTGTGATTGTTTTCACCGATCTGACGGCGTCACGATCCTCGAGAAGAAAAGGACAGGGGACAAGGCTGACCGTCAAACGACGGCGTTTCAGACGTTCTTT
GTCGGTATTAATGTGAAACTGATTTACATTAAGATCGACATGTGA

mRNA sequence

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Protein sequence

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MEDPHRLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAVILVSRNESGFVGFWERLRIKLAALRS
RWCDCFHRSDGVTILEKKRTGDKADRQTTAFQTFFVGINVKLIYIKIDM

Chy2G023960 (gene) of Cucumber (hystrix) v1 genome