; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G026080 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G026080
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionLysM domain-containing protein
Genome locationchrH02:2210962..2211810
RNA-Seq ExpressionChy2G026080
SyntenyChy2G026080
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2601126.1 hypothetical protein D8674_002131 [Pyrus ussuriensis x Pyrus communis]4.46e-2059.68Show/hide
Query:  RGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL
        RG ++    L+C+K YGVK+GDTCF +EQ F ++TA F  INPNLNCT LF+GQWLCL+  L
Subjt:  RGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL

KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]2.51e-3267.01Show/hide
Query:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL
        MAKA IS +  IFLLA SLLIF+ISV+ R+  FR VV  EA LELQCNK YGVK+GDTCF + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]2.15e-6398.98Show/hide
Query:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVLILP
        MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITT HFSFINPNLNCTDLFIGQWLCLDAVLILP
Subjt:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVLILP

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]1.70e-2962.11Show/hide
Query:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL
        MAKA I  +  IFLLAF LLIFSISV+          E  LELQCNK YGVK+GDTCF L   FK++T HF+FINPNLNC+ LF+GQWLC++A L
Subjt:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]1.46e-3064.21Show/hide
Query:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL
        MAKA IS +  IFLLA SLLIF+ISV+        V EA LELQCNK YGVK+GDTCF + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein1.9e-4798.98Show/hide
Query:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVLILP
        MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITT HFSFINPNLNCTDLFIGQWLCLDAVLILP
Subjt:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVLILP

A0A0A0KLD2 LysM domain-containing protein6.5e-2467.01Show/hide
Query:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL
        MAKA I  S  IFLLA SLLIF+ISV+ R+  FR VV  EA LELQCNK YGVK+GDTCF + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like1.0e-2162.11Show/hide
Query:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL
        MAKA I     IFLLAF LLIFSISV+          E  LELQCNK YGVK+GDTCF L   FK++T HF+FINPNLNC+ LF+GQWLC++A L
Subjt:  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL

A0A498IRU4 LysM domain-containing protein8.0e-1453.16Show/hide
Query:  FSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL
        FSLL+  I+         G ++    L+C+K YGVK+GDTCF +EQ F ++TA F  INPNLNCT LFIGQWLCL+  L
Subjt:  FSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL

A0A5N5FDD5 LysM domain-containing protein2.7e-1459.68Show/hide
Query:  RGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL
        RG ++    L+C+K YGVK+GDTCF +EQ F ++TA F  INPNLNCT LF+GQWLCL+  L
Subjt:  RGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVL

SwissProt top hitse value%identityAlignment
D4ALG0 LysM domain-containing protein ARB_051574.2e-0435.09Show/hide
Query:  VEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNL--NCTDLFIGQWLCL
        ++ G+   CNK + V+NG+TC  ++ K+K+T A     NP +  +CT L+   +LC+
Subjt:  VEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNL--NCTDLFIGQWLCL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGGCTATGATCTCCTCCTCATTTCCCATCTTCCTATTGGCTTTCTCTCTTCTCATTTTCTCTATTTCCGTCGAAACTCGTTCTACTCCCTTCCGTGGGGTTGT
TGAAGCTGGGTTGGAGTTACAATGCAACAAAGTTTATGGAGTAAAGAATGGAGACACATGCTTTGATCTTGAACAGAAATTTAAGATCACCACTGCCCACTTCAGTTTCA
TCAATCCAAATCTCAATTGCACTGATCTTTTCATTGGCCAATGGCTCTGTCTCGATGCTGTCCTTATCCTCCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGGCTATGATCTCCTCCTCATTTCCCATCTTCCTATTGGCTTTCTCTCTTCTCATTTTCTCTATTTCCGTCGAAACTCGTTCTACTCCCTTCCGTGGGGTTGT
TGAAGCTGGGTTGGAGTTACAATGCAACAAAGTTTATGGAGTAAAGAATGGAGACACATGCTTTGATCTTGAACAGAAATTTAAGATCACCACTGCCCACTTCAGTTTCA
TCAATCCAAATCTCAATTGCACTGATCTTTTCATTGGCCAATGGCTCTGTCTCGATGCTGTCCTTATCCTCCCTTGA
Protein sequenceShow/hide protein sequence
MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDLEQKFKITTAHFSFINPNLNCTDLFIGQWLCLDAVLILP