; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G026090 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G026090
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionLysM domain-containing protein
Genome locationchrH02:2213485..2214101
RNA-Seq ExpressionChy2G026090
SyntenyChy2G026090
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]1.49e-5594.74Show/hide
Query:  MAKATIPIAIFLLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT
        MAKATI IAIFLLA SLLIF+ISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQ FKL+TDHFDFINPNLNCSALFVSQWLCVNAFLT
Subjt:  MAKATIPIAIFLLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]4.90e-3267.01Show/hide
Query:  MAKATIPIA--IFLLAFSLLIFSISVKGRNL-FREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFL
        MAKA I  +  IFLLAFSLLIFSISV+ R+  FR VV  EA LELQCNK YGVK+GDTCF + Q FK++T HF FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKATIPIA--IFLLAFSLLIFSISVKGRNL-FREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFL

PQQ05751.1 hypothetical protein Pyn_28323 [Prunus yedoensis var. nudiflora]5.50e-2051.28Show/hide
Query:  LIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT
        L+  ++ +G+ L  E++   A+L+  C   YGVKSGDTCF IA+TF + T+ FD INPNLNC+ALFV QW+C+N  L+
Subjt:  LIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]7.69e-4886.32Show/hide
Query:  MAKATIPIAIFLLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT
        MAKATIPIAIFLLAF LLIFSISVKG     EVV  E SLELQCNKAYGVKSGDTCFA+A TFKLSTDHF+FINPNLNCSALFV QWLCVNAFLT
Subjt:  MAKATIPIAIFLLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]2.29e-4989.47Show/hide
Query:  MAKATIPIAIFLLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT
        MAKATI IAIFLLA SLLIF+ISVKG     EVVVEEASLELQCNKAYGVKSGDTCFAIAQ FKL+TDHFDFINPNLNCSALFVSQWLCVNAFLT
Subjt:  MAKATIPIAIFLLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein6.3e-2467.01Show/hide
Query:  MAKATI--PIAIFLLAFSLLIFSISVKGRNL-FREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFL
        MAKA I     IFLLAFSLLIFSISV+ R+  FR VV  EA LELQCNK YGVK+GDTCF + Q FK++T HF FINPNLNC+ LF+ QWLC++A L
Subjt:  MAKATI--PIAIFLLAFSLLIFSISVKGRNL-FREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFL

A0A0A0KLD2 LysM domain-containing protein8.8e-4294.74Show/hide
Query:  MAKATIPIAIFLLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT
        MAKATI IAIFLLA SLLIF+ISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQ FKL+TDHFDFINPNLNCSALFVSQWLCVNAFLT
Subjt:  MAKATIPIAIFLLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like9.4e-3686.32Show/hide
Query:  MAKATIPIAIFLLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT
        MAKATIPIAIFLLAF LLIFSISVKG     EVV  E SLELQCNKAYGVKSGDTCFA+A TFKLSTDHF+FINPNLNCSALFV QWLCVNAFLT
Subjt:  MAKATIPIAIFLLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT

A0A251PIL2 LysM domain-containing protein2.0e-1452.38Show/hide
Query:  LLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT
        +L  SLL+ + S + + L  E++  +  + L+C   YGVKSGDTCF IAQTF L T+ FD INPNLNC+ALFV QW+C+N  L+
Subjt:  LLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT

A0A314YKP2 LysM domain-containing protein1.6e-1451.19Show/hide
Query:  LLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT
        +L  SLL+  ++ +G+ L  E++   A+  L+C   YGVKSGDTCF IA+TF + T+ FD INPNLNC+ALFV QW+C+N  L+
Subjt:  LLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGGCTACCATCCCAATTGCCATTTTCCTATTGGCTTTCTCTCTTCTCATTTTCTCTATTTCTGTAAAAGGTCGTAACTTATTCCGTGAGGTTGTTGTGGAAGA
AGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTTAAGAGTGGAGACACATGCTTTGCTATTGCTCAGACATTCAAGCTCTCCACTGACCACTTCGATTTTATCA
ATCCAAACCTCAATTGCTCCGCTCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGGCTACCATCCCAATTGCCATTTTCCTATTGGCTTTCTCTCTTCTCATTTTCTCTATTTCTGTAAAAGGTCGTAACTTATTCCGTGAGGTTGTTGTGGAAGA
AGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTTAAGAGTGGAGACACATGCTTTGCTATTGCTCAGACATTCAAGCTCTCCACTGACCACTTCGATTTTATCA
ATCCAAACCTCAATTGCTCCGCTCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA
Protein sequenceShow/hide protein sequence
MAKATIPIAIFLLAFSLLIFSISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQTFKLSTDHFDFINPNLNCSALFVSQWLCVNAFLT