CuGenDBv2

Gene ID	Chy2G029560
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Translation initiation factor IF-2, putative isoform 1
Genome location	chrH02:4179713..4182075
RNA-Seq Expression	Chy2G029560
Synteny	Chy2G029560
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6604007.1 hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia]

8.04e-141

86.31

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Query:  MARRKGKKTVKKSSPSPVLEAKDEAAN------------DEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQ
        MARRK KK+VKKSSPSP+ EAKD +AN            DEDVERHA AIRAIRD+EI RLITELRLLRSYFNKEQLQTPLLQFFEE LP LSISR GEQ
Subjt:  MARRKGKKTVKKSSPSPVLEAKDEAAN------------DEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQ

Query:  GEIEVQWKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSI
        GEIEVQWKDTEDEL TNPADGIDIHASLLHRLS AYPNCSAGMRSFNGF+FSSKSVKTNPF VE LQIPNF LEEPSDNMVLGMPD+LQTPGVSNQRLSI
Subjt:  GEIEVQWKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEEG
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

XP_004143493.2 uncharacterized protein LOC101215210 [Cucumis sativus]

2.87e-154

96.51

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Query:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED
        MARRK KKTVKKSSPSP+LEAKDEAANDEDVERHAAAIRAIRD+EIGRLITELRLLRSYFNKEQLQTPLLQFFEE LPRLSISRTGEQGEIEVQWKDTED
Subjt:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED

Query:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP
        ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGF+FSSKSVKTNPFIVE LQIPNFVLEEPSDN+VLGMPDI QTPGVSNQRLSIGMTPKTRRLPKP
Subjt:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP

Query:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG

XP_008440665.1 PREDICTED: uncharacterized protein LOC103485008 [Cucumis melo]

6.76e-153

96.07

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Query:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED
        MARRK KKTVKKS+PSPVLEAKDE ANDEDVERHAAAIRAIRD+EIGRLITELRLLRSYFNKEQLQTPLLQFFEE LPRLSISRTGEQGEIEVQWKDTED
Subjt:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED

Query:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP
        ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGF+FSSKSVKTNPFIVE LQIPNF LEEPSDNMVLGMPDILQTPGV NQRLSIGMTPKTRRLPKP
Subjt:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP

Query:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG

XP_023543921.1 uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo]

1.33e-139

85.89

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Query:  MARRKGKKTVKKSSPSPVLEAKDEAAN------------DEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQ
        MARRK KK+VKKSSPSPV EAKD +AN            DEDVERHA AIRAIRD+EI RLITELRLLRSYFNKEQLQTPLLQFFEE LP LSISR GEQ
Subjt:  MARRKGKKTVKKSSPSPVLEAKDEAAN------------DEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQ

Query:  GEIEVQWKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSI
        GEIEVQWK+TEDEL TNPADGIDIHASLLHRLS AYPNCSAGMRSFNGF+FSSKSVKTNPF VE LQIPNF LEEPSDNMVLGMPD+LQTPGVSNQRLSI
Subjt:  GEIEVQWKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GMTPKTRRLPKPGE+LVSIHGSPLGVY+E+NMEAIHESEEG
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

XP_038882572.1 uncharacterized protein LOC120073798 [Benincasa hispida]

1.23e-139

88.21

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Query:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED
        M RRK +KTVKK SPSPV EAKDEAANDEDVERHAAAIRAIRD+EI RLITELRLLRSYFN+EQLQTPLLQFF+E LP LSISR GE+GEIEVQWK+ ED
Subjt:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED

Query:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP
        EL +NPAD IDIHASLLHRLS AYPNCSAG+RS NGF+FSSKSVKTNPF VE L+IPNFVLEEPSDNMVLGMPDILQTPGV+NQRLSIGMTPKTRRLPKP
Subjt:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP

Query:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GEMLVSIHGSPLGVY+EDNMEAIHESEEG
Subjt:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KK81 Uncharacterized protein

4.0e-117

95.63

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Query:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED
        MARRK KKTVKKSSPSP+LEAKDEAANDEDVERHAAAIRAIRD+EI RLIT LRLLRSYFNKEQLQTPLLQFFEE LPRLSISRTGEQGEIEVQWKDTED
Subjt:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED

Query:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP
        ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGF+FSSKSVKTNPFIVE LQIPNFVLEEPSDN+VLGMPDI QTPGVSNQRLSIGMTPKTRRLPKP
Subjt:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP

Query:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A1S3B1M1 uncharacterized protein LOC103485008

8.1e-118

96.07

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Query:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED
        MARRK KKTVKKS+PSPVLEAKDE ANDEDVERHAAAIRAIRD+EIGRLITELRLLRSYFNKEQLQTPLLQFFEE LPRLSISRTGEQGEIEVQWKDTED
Subjt:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED

Query:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP
        ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGF+FSSKSVKTNPFIVE LQIPNF LEEPSDNMVLGMPDILQTPGV NQRLSIGMTPKTRRLPKP
Subjt:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP

Query:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A1S4DWB9 uncharacterized protein LOC103489436

2.2e-107

88.09

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Query:  MARRKGKKTVKKSSPSPVLEAKDEAA------NDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQ
        MARRK KKTVKKSSPS    AKDEAA      +DEDVERHAAAIRAIRD+EI RLITELRLLRSYFNKEQLQTPLLQFFEE LP LSIS  G+QGEIEVQ
Subjt:  MARRKGKKTVKKSSPSPVLEAKDEAA------NDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQ

Query:  WKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKT
        WKDTEDEL TNPADG+DIHASLLHRLS AYP CSAGMRSFNGF+FSSKSVKTNPF  E LQIPNFVLEEPSDNMVLGMPDILQTPG+SNQRLSIGMTPKT
Subjt:  WKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  RRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A5D3CLG2 Uncharacterized protein

8.1e-118

96.07

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Query:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED
        MARRK KKTVKKS+PSPVLEAKDE ANDEDVERHAAAIRAIRD+EIGRLITELRLLRSYFNKEQLQTPLLQFFEE LPRLSISRTGEQGEIEVQWKDTED
Subjt:  MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTED

Query:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP
        ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGF+FSSKSVKTNPFIVE LQIPNF LEEPSDNMVLGMPDILQTPGV NQRLSIGMTPKTRRLPKP
Subjt:  ELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKP

Query:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  GEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A6J1ILD3 uncharacterized protein LOC111478496

1.2e-105

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Query:  MARRKGKKTVKKSSPSPVLEAKDEAAN------------DEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQ
        MARRK KK+VKKSSPSPV EAKD +AN            DEDVERHA AIRAIRD+EI RLITELRLLRSYFNKEQLQTPLLQFF E LP LSISR GEQ
Subjt:  MARRKGKKTVKKSSPSPVLEAKDEAAN------------DEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQ

Query:  GEIEVQWKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSI
        GEIEVQWKDTEDEL TNPADGIDIHASLLHRLS AYPNCSAG+RSFNGF+FSSKSVKTNPF VE LQIPNFVLEEPSDNMVLGMPD+LQTPG SNQRLSI
Subjt:  GEIEVQWKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE
        GMTPKTRRLPKPGE++VSIHGSPLGVY+E NMEAIHESEE
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G39630.1 unknown protein

3.8e-51

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Query:  MARRKGKKTVKKSSPSP------VLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQ
        M +RK K+ VK +           +E K E   DE+VER  AAIRAIRD+EI +++T LRLLRSYF +EQL TP+L FF+ENLP LSISR  E GEIE++
Subjt:  MARRKGKKTVKKSSPSP------VLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQ

Query:  WKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKT
        W+D   +      +G+D++ S+L RLS+ + +  +   S  G+D    +VK N    +  Q+ N V +  S+N +L   D  QTPGV+ QRLS GMTPKT
Subjt:  WKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKT

Query:  RRLPKPGEMLVSIHGSPLGVYKED-NMEAIHE
         RLPK GEM++S+HGSPLGVYKED NM AI+E
Subjt:  RRLPKPGEMLVSIHGSPLGVYKED-NMEAIHE

Sequences

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CDS sequence

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ATGGCAAGGCGAAAGGGGAAGAAAACGGTTAAGAAGTCCAGCCCTTCACCTGTACTAGAAGCAAAGGATGAAGCAGCGAATGACGAGGATGTTGAACGGCATGCTGCTGC
AATCCGTGCCATTCGGGATTTGGAGATCGGGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAGGAGCAATTGCAAACTCCTTTATTGCAATTCTTCG
AAGAAAACCTCCCTAGGTTGTCTATTTCGAGAACAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAGCTACGCACCAATCCAGCTGATGGAATA
GATATACATGCGTCTCTCCTTCACCGCCTGTCGATAGCTTATCCTAACTGCTCTGCCGGGATGCGATCTTTCAATGGATTCGACTTTTCCAGTAAATCAGTGAAAACGAA
TCCTTTCATTGTCGAGAAACTGCAAATTCCAAACTTCGTTTTGGAGGAGCCCTCGGATAATATGGTGCTCGGCATGCCAGATATACTCCAAACTCCTGGGGTGAGTAACC
AACGATTATCCATTGGGATGACTCCGAAAACCCGAAGACTGCCAAAACCAGGCGAGATGCTTGTGTCCATCCATGGATCCCCCTTGGGTGTTTACAAGGAAGACAACATG
GAAGCAATCCATGAATCGGAAGAGGGTTGA

mRNA sequence

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Protein sequence

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MARRKGKKTVKKSSPSPVLEAKDEAANDEDVERHAAAIRAIRDLEIGRLITELRLLRSYFNKEQLQTPLLQFFEENLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGI
DIHASLLHRLSIAYPNCSAGMRSFNGFDFSSKSVKTNPFIVEKLQIPNFVLEEPSDNMVLGMPDILQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNM
EAIHESEEG

Chy2G029560 (gene) of Cucumber (hystrix) v1 genome