; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G032150 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G032150
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionMitochodrial transcription termination factor
Genome locationchrH02:6263127..6263853
RNA-Seq ExpressionChy2G032150
SyntenyChy2G032150
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008440198.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 [Cucumis melo]3.11e-8965.15Show/hide
Query:  MDCFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQG
        MD F   YLLSS QA VSILVNQPL  WQKLKVATCSTLSVK+VEE    GTLAHAND TEVLRRWGCTDN+IA+IFAHG S  RS+ NQLQNNLHLL G
Subjt:  MDCFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQG

Query:  LGITSPDLGS----------------------------------------------SSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEFIQKTGLSQ
        LGITSPDL                                                S YEE+GLSKKDLV  LL YPT IPRTSFN+EKMEFIQKTGLSQ
Subjt:  LGITSPDLGS----------------------------------------------SSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEFIQKTGLSQ

Query:  GDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI
        GDKLFKY V+IICISRLETI Q+VANLKKFGFTEDE F+ I
Subjt:  GDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI

XP_022978594.1 uncharacterized protein LOC111478530 isoform X1 [Cucurbita maxima]6.42e-7754.62Show/hide
Query:  CFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLG
        CF LCYLL S QAF SILVNQ      KLKVA+CST+S KQVEEE GEG LAHANDSTEV RRWGC D++IA+IFA GPS  RSD+NQLQ+ L LLQGLG
Subjt:  CFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLG

Query:  ITSPDL---------------------------------------------------------GSSSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKME
        ITSPDL                                                           S YEE+GLS+KDL+  LL  PT IPR+SFNDEKM 
Subjt:  ITSPDL---------------------------------------------------------GSSSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKME

Query:  FIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS
        +IQKTGL+ GDK++KY V+II ISRLETI Q+VANL+KFGFTEDETF+ +  SP + ++S
Subjt:  FIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS

XP_022978595.1 uncharacterized protein LOC111478530 isoform X2 [Cucurbita maxima]8.48e-7854.62Show/hide
Query:  CFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLG
        CF LCYLL S QAF SILVNQ      KLKVA+CST+S KQVEEE GEG LAHANDSTEV RRWGC D++IA+IFA GPS  RSD+NQLQ+ L LLQGLG
Subjt:  CFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLG

Query:  ITSPDL---------------------------------------------------------GSSSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKME
        ITSPDL                                                           S YEE+GLS+KDL+  LL  PT IPR+SFNDEKM 
Subjt:  ITSPDL---------------------------------------------------------GSSSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKME

Query:  FIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS
        +IQKTGL+ GDK++KY V+II ISRLETI Q+VANL+KFGFTEDETF+ +  SP + ++S
Subjt:  FIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS

XP_031742903.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105436024 [Cucumis sativus]3.01e-9875Show/hide
Query:  TCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLGITSPDLGS------------------------
        TCSTLSVKQVEEE G+GTLAHANDSTEVLRRWGCTDN+IAEIFAHGPS  RSDINQLQNNLHLLQGLGITSPDL                          
Subjt:  TCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLGITSPDLGS------------------------

Query:  --------------SSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEFIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTIS
                      S YEEMGLSKKDLVRTLLFYPTFI RTSFN EKM+FIQKTGLSQG KLFKY VSIICISRLETIHQQVANLKKFGFTEDETFS IS
Subjt:  --------------SSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEFIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTIS

Query:  PYLDSISR
        PYLDSISR
Subjt:  PYLDSISR

XP_038881817.1 uncharacterized protein LOC120073205, partial [Benincasa hispida]1.39e-8458.4Show/hide
Query:  WQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLGITSPDLGS--
        WQAFVSILV+QPL  WQ LKVATCST+SVKQVE+E GEG LAHAND TEV RRWGCTDN+IA+IFA GPS  RSD+NQLQN LHLLQGLGITSPDL    
Subjt:  WQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLGITSPDLGS--

Query:  -------------------------------------------------------SSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEFIQKTGLSQG
                                                               S YEEMGLSKKDL+  L+  PT IPRTSFNDEKME+IQKTGLSQG
Subjt:  -------------------------------------------------------SSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEFIQKTGLSQG

Query:  DKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS
        DK+FKY V+II ISRLETI  +VANL+KFGFTEDE F+ +  SP + ++S
Subjt:  DKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS

TrEMBL top hitse value%identityAlignment
A0A1S3B056 LOW QUALITY PROTEIN: uncharacterized protein LOC1034847331.3e-7165.15Show/hide
Query:  MDCFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQG
        MD F   YLLSS QA VSILVNQPL  WQKLKVATCSTLSVK+VE    EGTLAHAND TEVLRRWGCTDN+IA+IFAHG S  RS+ NQLQNNLHLL G
Subjt:  MDCFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQG

Query:  LGITSPDLGS----------------------------------------------SSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEFIQKTGLSQ
        LGITSPDL                                                S YEE+GLSKKDLV  LL YPT IPRTSFN+EKMEFIQKTGLSQ
Subjt:  LGITSPDLGS----------------------------------------------SSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEFIQKTGLSQ

Query:  GDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI
        GDKLFKY V+IICISRLETI Q+VANLKKFGFTEDE F+ I
Subjt:  GDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI

A0A6J1E035 uncharacterized protein LOC1110246794.0e-6053.28Show/hide
Query:  FMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLGI
        F L YLL S QAF SIL NQPL   Q L+VATCST+S  QV E  G+GTLAHANDS+EV RRWGCTDN+IA+IFA GPS  RSD+ QLQN LHLL+GLGI
Subjt:  FMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLGI

Query:  TSPDLGS---------------------------------------------------------SSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEF
        TSPDL                                                           S YEEMGLSKKDL+  L+  PT IPR+SFNDEK+E+
Subjt:  TSPDLGS---------------------------------------------------------SSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEF

Query:  IQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS
        IQKTGLS+GDK++KY V+I+ ISRLETI Q+VANL+KFGFT+DE F+ +  SP + ++S
Subjt:  IQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS

A0A6J1GFZ6 uncharacterized protein LOC1114538172.6e-5952.69Show/hide
Query:  CFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLG
        CF LCYLLSS QAF SILVN      QKLKVA+CST+S KQVEE+ GE  LAHANDSTEV RRWGC D++IA+IFA  PS  RSD+N LQ+ L LLQG+G
Subjt:  CFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLG

Query:  ITSPDL---------------------------------------------------------GSSSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKME
        ITSPDL                                                           S YEE+GLS+KDL+  LL  PT IPR+SFNDEKM 
Subjt:  ITSPDL---------------------------------------------------------GSSSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKME

Query:  FIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS
        +IQKTGL+ GDK++KY V+II ISRLETI Q+VA+L+KFGFTEDETF+ +  SP + ++S
Subjt:  FIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS

A0A6J1IQK9 uncharacterized protein LOC111478530 isoform X28.6e-6354.62Show/hide
Query:  CFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLG
        CF LCYLL S QAF SILVN      QKLKVA+CST+S KQVEEE GEG LAHANDSTEV RRWGC D++IA+IFA GPS  RSD+NQLQ+ L LLQGLG
Subjt:  CFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLG

Query:  ITSPDL---------------------------------------------------------GSSSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKME
        ITSPDL                                                           S YEE+GLS+KDL+  LL  PT IPR+SFNDEKM 
Subjt:  ITSPDL---------------------------------------------------------GSSSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKME

Query:  FIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS
        +IQKTGL+ GDK++KY V+II ISRLETI Q+VANL+KFGFTEDETF+ +  SP + ++S
Subjt:  FIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS

A0A6J1IUG6 uncharacterized protein LOC111478530 isoform X18.6e-6354.62Show/hide
Query:  CFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLG
        CF LCYLL S QAF SILVN      QKLKVA+CST+S KQVEEE GEG LAHANDSTEV RRWGC D++IA+IFA GPS  RSD+NQLQ+ L LLQGLG
Subjt:  CFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLG

Query:  ITSPDL---------------------------------------------------------GSSSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKME
        ITSPDL                                                           S YEE+GLS+KDL+  LL  PT IPR+SFNDEKM 
Subjt:  ITSPDL---------------------------------------------------------GSSSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKME

Query:  FIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS
        +IQKTGL+ GDK++KY V+II ISRLETI Q+VANL+KFGFTEDETF+ +  SP + ++S
Subjt:  FIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTI--SPYLDSIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79220.1 Mitochondrial transcription termination factor family protein2.6e-2736.76Show/hide
Query:  EVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLGITSPD----------------------------LGSSS--------------------
        +VLRRWGC D+ I+++F   P+  R+++ QL+  L LL+ LGITS D                            LGS                      
Subjt:  EVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLGITSPD----------------------------LGSSS--------------------

Query:  -------YEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEFIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDE
               Y+ +G S++DLV  L+  PT IPRT+FN+EK E+I+KTG+++  K+FKY   II +SR+ETI ++V NL+KFGF+E+E
Subjt:  -------YEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEFIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGTTTCATGCTCTGCTATTTACTATCTTCGTGGCAAGCATTTGTTTCCATTTTGGTGAACCAACCTCTAGGAGGTTGGCAAAAATTGAAGGTCGCCACTTGTTC
AACACTAAGTGTGAAACAGGTTGAAGAGGAGCCGGGAGAAGGGACATTAGCACATGCCAATGACTCTACTGAAGTTCTACGGAGATGGGGTTGTACTGACAACAATATTG
CAGAAATCTTTGCACATGGGCCTTCTCGGCTCAGGAGTGACATAAACCAACTGCAAAATAATCTCCACTTGCTGCAAGGCCTAGGGATCACATCTCCCGACCTTGGTTCC
TCGAGTTATGAAGAAATGGGTCTAAGTAAAAAGGATTTGGTTCGCACGCTTCTATTTTACCCCACATTCATTCCAAGAACTTCATTTAATGATGAGAAGATGGAATTCAT
ACAAAAAACAGGGCTCTCACAGGGTGACAAGTTGTTCAAATACGCCGTTTCAATCATTTGTATCTCACGACTTGAAACAATTCATCAACAAGTAGCCAATTTGAAGAAGT
TTGGTTTCACAGAAGATGAGACATTTTCGACGATCTCCCCTTACCTTGACTCTATAAGTCGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTGTTTCATGCTCTGCTATTTACTATCTTCGTGGCAAGCATTTGTTTCCATTTTGGTGAACCAACCTCTAGGAGGTTGGCAAAAATTGAAGGTCGCCACTTGTTC
AACACTAAGTGTGAAACAGGTTGAAGAGGAGCCGGGAGAAGGGACATTAGCACATGCCAATGACTCTACTGAAGTTCTACGGAGATGGGGTTGTACTGACAACAATATTG
CAGAAATCTTTGCACATGGGCCTTCTCGGCTCAGGAGTGACATAAACCAACTGCAAAATAATCTCCACTTGCTGCAAGGCCTAGGGATCACATCTCCCGACCTTGGTTCC
TCGAGTTATGAAGAAATGGGTCTAAGTAAAAAGGATTTGGTTCGCACGCTTCTATTTTACCCCACATTCATTCCAAGAACTTCATTTAATGATGAGAAGATGGAATTCAT
ACAAAAAACAGGGCTCTCACAGGGTGACAAGTTGTTCAAATACGCCGTTTCAATCATTTGTATCTCACGACTTGAAACAATTCATCAACAAGTAGCCAATTTGAAGAAGT
TTGGTTTCACAGAAGATGAGACATTTTCGACGATCTCCCCTTACCTTGACTCTATAAGTCGATAA
Protein sequenceShow/hide protein sequence
MDCFMLCYLLSSWQAFVSILVNQPLGGWQKLKVATCSTLSVKQVEEEPGEGTLAHANDSTEVLRRWGCTDNNIAEIFAHGPSRLRSDINQLQNNLHLLQGLGITSPDLGS
SSYEEMGLSKKDLVRTLLFYPTFIPRTSFNDEKMEFIQKTGLSQGDKLFKYAVSIICISRLETIHQQVANLKKFGFTEDETFSTISPYLDSISR