CuGenDBv2

Gene ID	Chy2G033500
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chrH02:7612373..7612873
RNA-Seq Expression	Chy2G033500
Synteny	Chy2G033500
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055915.1 copia protein [Cucumis melo var. makuwa]

1.01e-55

65.87

Show/hide

Query:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA
        MKTLL SQDLWDLVE GY DPDDEG L+ENR+KD KALVI+QQAVHD+VFSRIAAA TSKQAWLILQKAFQGD+RVLVVKLQSL+RDFETLMMK+GESIA
Subjt:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA

Query:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF
                 +      S  Q +        +   V+        RS+TPKFDH+VAAIEE KDLSTF
Subjt:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF

KAA0058478.1 UBN2 domain-containing protein [Cucumis melo var. makuwa]

5.79e-62

66.47

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Query:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA
        MKTLLRSQDLWDLVE GYADPDDEG LRENRKKDS+ALVIIQQAVH+ +FS IAA  TSKQ WLILQKAFQGD+RVLVVKLQSLRRDFETLMMK+GESIA
Subjt:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA

Query:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF
              +  +    T             +    ++V+ A     RS+TPKFDH+VAAIEE KDLSTF
Subjt:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF

TYK00351.1 UBN2 domain-containing protein [Cucumis melo var. makuwa]

2.16e-59

64.67

Show/hide

Query:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA
        MKTLLRSQDLWDLVE GYADPDDE  L EN+KKDSKALVIIQQ VHDSVFSRI AA +SKQ+WLILQKAFQGD+RVLVVKLQSLRRDFETL MK+GESIA
Subjt:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA

Query:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF
                 +      S  + +     +  +   V+        RS+TPKFDH+VAAIEE K+LSTF
Subjt:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF

TYK27735.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]

9.23e-57

67.07

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Query:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA
        +KTLLRSQDLWDLVE GY DPDDEG LRENRKKDSKALVIIQQAVHDSVFSRIA A TSKQAWLILQKAFQGD+RVL+VKLQSLRRDFETLMMK+GESIA
Subjt:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA

Query:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF
                 +      S  Q +        +   V+        RS+TPKFDH+VAAIEE K+L TF
Subjt:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF

XP_008463459.1 PREDICTED: uncharacterized protein LOC103501626 [Cucumis melo]

1.91e-57

64.67

Show/hide

Query:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA
        MKTLLRSQDLWDLVE GYADPDDE  L EN+KKDSKALVIIQQ VHDSVFSRI AA +SKQAWLILQKAFQGD+RVL+VKLQSLRRDFETL MK+GESIA
Subjt:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA

Query:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF
                 +    T   R        +  +   V+        RS+T KFDH+VAAIEE K+LSTF
Subjt:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CJ95 uncharacterized protein LOC103501626

6.6e-45

64.67

Show/hide

Query:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA
        MKTLLRSQDLWDLVE GYADPDDE  L EN+KKDSKALVIIQQ VHDSVFSRI AA +SKQAWLILQKAFQGD+RVL+VKLQSLRRDFETL MK+GESIA
Subjt:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA

Query:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF
                 +    T   R        +  +   V+        RS+T KFDH+VAAIEE K+LSTF
Subjt:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF

A0A5A7UQM0 Copia protein

1.9e-47

65.87

Show/hide

Query:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA
        MKTLL SQDLWDLVE GY DPDDEG L+ENR+KD KALVI+QQAVHD+VFSRIAAA TSKQAWLILQKAFQGD+RVLVVKLQSL+RDFETLMMK+GESIA
Subjt:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA

Query:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF
                     +  S  Q +        +   V+        RS+TPKFDH+VAAIEE KDLSTF
Subjt:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF

A0A5D3BKL0 UBN2 domain-containing protein

1.0e-45

64.67

Show/hide

Query:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA
        MKTLLRSQDLWDLVE GYADPDDE  L EN+KKDSKALVIIQQ VHDSVFSRI AA +SKQ+WLILQKAFQGD+RVLVVKLQSLRRDFETL MK+GESIA
Subjt:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA

Query:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF
                     +  S  + +     +  +   V+        RS+TPKFDH+VAAIEE K+LSTF
Subjt:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF

A0A5D3CAD5 UBN2 domain-containing protein

1.4e-47

66.47

Show/hide

Query:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA
        MKTLLRSQDLWDLVE GYADPDDEG LRENRKKDS+ALVIIQQAVH+ +FS IAA  TSKQ WLILQKAFQGD+RVLVVKLQSLRRDFETLMMK+GESIA
Subjt:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA

Query:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF
              +  +    T             +    ++V+ A     RS+TPKFDH+VAAIEE KDLSTF
Subjt:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF

A0A5D3DWP2 Putative gag-pol polyprotein, identical

6.4e-48

67.07

Show/hide

Query:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA
        +KTLLRSQDLWDLVE GY DPDDEG LRENRKKDSKALVIIQQAVHDSVFSRIA A TSKQAWLILQKAFQGD+RVL+VKLQSLRRDFETLMMK+GESIA
Subjt:  MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIA

Query:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF
                     +  S  Q +        +   V+        RS+TPKFDH+VAAIEE K+L TF
Subjt:  GEQEERLEGVGDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

6.4e-08

35.29

Show/hide

Query:  MKTLLRSQDLWDLVEHGYADPDDEGM--------LRENRKKDSKALVIIQQAVHDSVFSRIAAAATSK
        MK +L + D+W++VE G+ +P++EG         LR++RK+D KAL +I Q + +  F ++  A ++K
Subjt:  MKTLLRSQDLWDLVEHGYADPDDEGM--------LRENRKKDSKALVIIQQAVHDSVFSRIAAAATSK

Sequences

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CDS sequence

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ATGAAGACTCTTCTCAGATCTCAAGACTTATGGGACTTAGTAGAACACGGCTATGCGGATCCTGACGACGAAGGCATGTTGCGAGAGAACAGGAAGAAAGACTCGAAGGC
GTTGGTGATCATTCAACAAGCAGTCCACGACAGTGTTTTTTCGCGGATTGCTGCAGCAGCAACGTCAAAGCAAGCGTGGTTGATTTTGCAAAAGGCATTTCAAGGAGATG
CAAGAGTACTTGTGGTAAAATTGCAATCACTTAGGCGAGACTTTGAGACCTTGATGATGAAAGATGGAGAATCGATTGCGGGAGAACAGGAAGAAAGACTCGAAGGCGTT
GGTGATCATTCAACAAGCAGTCCACGACAGTGTTTTTTCGCGGATTGCTGCAGCAGCAACGTCAAAGCAAGCGTGGTTGATTTTGCAAAAGGCATTTCAAGGAGAAGCAT
GACTCCAAAGTTTGATCATATTGTGGCTGCAATAGAAGAACCAAAGGATCTATCCACTTTT

mRNA sequence

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Protein sequence

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MKTLLRSQDLWDLVEHGYADPDDEGMLRENRKKDSKALVIIQQAVHDSVFSRIAAAATSKQAWLILQKAFQGDARVLVVKLQSLRRDFETLMMKDGESIAGEQEERLEGV
GDHSTSSPRQCFFADCCSSNVKASVVDFAKGISRRSMTPKFDHIVAAIEEPKDLSTF

Chy2G033500 (gene) of Cucumber (hystrix) v1 genome